RNA–Protein interactions for RNA: ENST00000342887.1

CFAP54-201, Transcript of cilia and flagella associated protein 54, humanhuman

TSL 2

Gene CFAP54, Length 3,686 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54-201ENST00000342887 RIMS2Q9UQ26 1411 aa10.78□□□□□ -0.68
CFAP54-201ENST00000342887 USP31Q70CQ4 1352 aa10.77□□□□□ -0.68
CFAP54-201ENST00000342887 WWC1Q8IX03 1113 aa10.77□□□□□ -0.68
CFAP54-201ENST00000342887 PTPRUQ92729 1446 aa10.77□□□□□ -0.69
CFAP54-201ENST00000342887 RGS12O14924 1447 aa10.76□□□□□ -0.69
CFAP54-201ENST00000342887 PDE3AQ14432 1141 aa10.76□□□□□ -0.69
CFAP54-201ENST00000342887 CC2D1BQ5T0F9 858 aaKnown RBP10.76□□□□□ -0.69
CFAP54-201ENST00000342887 GLI3P10071 1580 aa10.75□□□□□ -0.69
CFAP54-201ENST00000342887 E9PSI1 815 aa10.75□□□□□ -0.69
CFAP54-201ENST00000342887 NCOA3Q9Y6Q9 1424 aa10.75□□□□□ -0.69
CFAP54-201ENST00000342887 KNSTRNQ9Y448 316 aa10.75□□□□□ -0.69
CFAP54-201ENST00000342887 CGNL1Q0VF96 1302 aa10.74□□□□□ -0.69
CFAP54-201ENST00000342887 ALS2Q96Q42 1657 aa10.74□□□□□ -0.69
CFAP54-201ENST00000342887 CEP170BQ9Y4F5 1589 aaPredicted RBP10.74□□□□□ -0.69
CFAP54-201ENST00000342887 CT47B1P0C2W7 299 aaPredicted RBP10.74□□□□□ -0.69
CFAP54-201ENST00000342887 DEKP35659 375 aaKnown RBP10.74□□□□□ -0.69
CFAP54-201ENST00000342887 GOLGA2Q08379 1002 aa10.74□□□□□ -0.69
CFAP54-201ENST00000342887 PLEKHG1Q9ULL1 1385 aa10.74□□□□□ -0.69
CFAP54-201ENST00000342887 NFAT5O94916 1531 aa10.74□□□□□ -0.69
CFAP54-201ENST00000342887 CRBNQ96SW2 442 aa10.74□□□□□ -0.69
CFAP54-201ENST00000342887 VGFO15240 615 aaPredicted RBP10.73□□□□□ -0.69
CFAP54-201ENST00000342887 RAPGEF3O95398 923 aa10.73□□□□□ -0.69
CFAP54-201ENST00000342887 TRIM35Q9UPQ4 493 aa10.73□□□□□ -0.69
CFAP54-201ENST00000342887 IPO9Q96P70 1041 aaKnown RBP10.73□□□□□ -0.69
CFAP54-201ENST00000342887 CENPQQ7L2Z9 268 aaPredicted RBP10.72□□□□□ -0.69
CFAP54-201ENST00000342887 METP08581 1390 aa10.72□□□□□ -0.69
CFAP54-201ENST00000342887 PARP4Q9UKK3 1724 aaKnown RBP10.72□□□□□ -0.69
CFAP54-201ENST00000342887 COL18A1P39060 1754 aa10.71□□□□□ -0.69
CFAP54-201ENST00000342887 PAK3O75914 559 aaPredicted RBP10.71□□□□□ -0.69
CFAP54-201ENST00000342887 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.71□□□□□ -0.69
CFAP54-201ENST00000342887 EVC2Q86UK5 1308 aa10.71□□□□□ -0.69
CFAP54-201ENST00000342887 RUNDC1Q96C34 613 aa10.71□□□□□ -0.7
CFAP54-201ENST00000342887 ZNF853P0CG23 659 aa10.7□□□□□ -0.7
CFAP54-201ENST00000342887 RGPD2P0DJD1 1756 aa10.7□□□□□ -0.7
CFAP54-201ENST00000342887 SLIT3O75094 1523 aa10.7□□□□□ -0.7
CFAP54-201ENST00000342887 XIRP1Q702N8 1843 aaKnown RBP10.7□□□□□ -0.7
CFAP54-201ENST00000342887 RARSP54136 660 aaKnown RBP10.7□□□□□ -0.7
CFAP54-201ENST00000342887 SLC12A5Q9H2X9 1139 aa10.7□□□□□ -0.7
CFAP54-201ENST00000342887 FYB1O15117 783 aa10.69□□□□□ -0.7
CFAP54-201ENST00000342887 KIF24Q5T7B8 1368 aa10.69□□□□□ -0.7
CFAP54-201ENST00000342887 PDE4AP27815 886 aa10.69□□□□□ -0.7
CFAP54-201ENST00000342887 PAPPAQ13219 1627 aa10.68□□□□□ -0.7
CFAP54-201ENST00000342887 TMEM2Q9UHN6 1383 aa10.68□□□□□ -0.7
CFAP54-201ENST00000342887 STRCP1A6NGW2 1772 aa10.67□□□□□ -0.7
CFAP54-201ENST00000342887 KDRP35968 1356 aa10.67□□□□□ -0.7
CFAP54-201ENST00000342887 PLEKHG5O94827 1062 aa10.67□□□□□ -0.7
CFAP54-201ENST00000342887 PKD1L3Q7Z443 1732 aa10.67□□□□□ -0.7
CFAP54-201ENST00000342887 ANKARQ7Z5J8 1434 aa10.66□□□□□ -0.7
CFAP54-201ENST00000342887 IGHDP01880 384 aa10.65□□□□□ -0.7
CFAP54-201ENST00000342887 RSPH6AQ9H0K4 717 aa10.65□□□□□ -0.7
CFAP54-201ENST00000342887 MYT1LQ9UL68 1186 aa10.65□□□□□ -0.7
CFAP54-201ENST00000342887 SHANK3Q9BYB0 1731 aa10.65□□□□□ -0.7
CFAP54-201ENST00000342887 APAF1O14727 1248 aa10.65□□□□□ -0.7
CFAP54-201ENST00000342887 IL27Q8NEV9 243 aa10.65□□□□□ -0.7
CFAP54-201ENST00000342887 KIF1AQ12756 1690 aa10.65□□□□□ -0.7
CFAP54-201ENST00000342887 PLIN1O60240 522 aa10.65□□□□□ -0.7
CFAP54-201ENST00000342887 USP6P35125 1406 aa10.65□□□□□ -0.7
CFAP54-201ENST00000342887 CRB1P82279 1406 aa10.64□□□□□ -0.71
CFAP54-201ENST00000342887 NOP58Q9Y2X3 529 aaKnown RBP10.64□□□□□ -0.71
CFAP54-201ENST00000342887 ROBO2Q9HCK4 1378 aa10.64□□□□□ -0.71
CFAP54-201ENST00000342887 DDIT3P35638 169 aa10.64□□□□□ -0.71
CFAP54-201ENST00000342887 DDX60Q8IY21 1712 aaKnown RBP10.64□□□□□ -0.71
CFAP54-201ENST00000342887 TMEM132EQ6IEE7 984 aa10.64□□□□□ -0.71
CFAP54-201ENST00000342887 ABCA3Q99758 1704 aa10.64□□□□□ -0.71
CFAP54-201ENST00000342887 UBR2Q8IWV8 1755 aa10.64□□□□□ -0.71
CFAP54-201ENST00000342887 IBTKQ9P2D0 1353 aaPredicted RBP10.64□□□□□ -0.71
CFAP54-201ENST00000342887 SCN11AQ9UI33 1791 aa10.63□□□□□ -0.71
CFAP54-201ENST00000342887 RLBP1P12271 317 aa10.63□□□□□ -0.71
CFAP54-201ENST00000342887 BCAR3O75815 825 aa10.63□□□□□ -0.71
CFAP54-201ENST00000342887 PRR36Q9H6K5 1346 aa10.62□□□□□ -0.71
CFAP54-201ENST00000342887 ATP10DQ9P241 1426 aa10.62□□□□□ -0.71
CFAP54-201ENST00000342887 HDAC1Q13547 482 aaPredicted RBP10.62□□□□□ -0.71
CFAP54-201ENST00000342887 RTL1A6NKG5 1358 aa10.62□□□□□ -0.71
CFAP54-201ENST00000342887 PXDNLA1KZ92 1463 aa10.62□□□□□ -0.71
CFAP54-201ENST00000342887 IL13P35225 146 aa10.62□□□□□ -0.71
CFAP54-201ENST00000342887 RTN4Q9NQC3 1192 aaKnown RBP10.62□□□□□ -0.71
CFAP54-201ENST00000342887 LAMB4A4D0S4 1761 aa10.61□□□□□ -0.71
CFAP54-201ENST00000342887 TCP11L2Q8N4U5 519 aa10.61□□□□□ -0.71
CFAP54-201ENST00000342887 MTHFSP49914 203 aa10.61□□□□□ -0.71
CFAP54-201ENST00000342887 ANTXR1Q9H6X2 564 aa10.61□□□□□ -0.71
CFAP54-201ENST00000342887 TRAK1Q9UPV9 953 aa10.61□□□□□ -0.71
CFAP54-201ENST00000342887 FBXO31Q5XUX0 539 aaPredicted RBP10.6□□□□□ -0.71
CFAP54-201ENST00000342887 ABCC4O15439 1325 aa10.6□□□□□ -0.71
CFAP54-201ENST00000342887 TNRQ92752 1358 aa10.59□□□□□ -0.71
CFAP54-201ENST00000342887 C5P01031 1676 aa10.59□□□□□ -0.71
CFAP54-201ENST00000342887 PLEKHG3A1L390 1219 aa10.59□□□□□ -0.71
CFAP54-201ENST00000342887 ALDH1L2Q3SY69 923 aa10.59□□□□□ -0.71
CFAP54-201ENST00000342887 POLKQ9UBT6 870 aa10.59□□□□□ -0.71
CFAP54-201ENST00000342887 RGPD5Q99666 1765 aa10.59□□□□□ -0.71
CFAP54-201ENST00000342887 EIF5BO60841 1220 aaKnown RBP10.59□□□□□ -0.71
CFAP54-201ENST00000342887 WDR43Q15061 677 aaKnown RBP eCLIP10.59□□□□□ -0.71
CFAP54-201ENST00000342887 ZNF428Q96B54 188 aa10.59□□□□□ -0.71
CFAP54-201ENST00000342887 PCDHB15Q9Y5E8 787 aa10.59□□□□□ -0.71
CFAP54-201ENST00000342887 TMPOP42166 694 aaKnown RBP10.58□□□□□ -0.72
CFAP54-201ENST00000342887 CLUAP1Q96AJ1 413 aa10.58□□□□□ -0.72
CFAP54-201ENST00000342887 USP35Q9P2H5 1018 aa10.58□□□□□ -0.72
CFAP54-201ENST00000342887 PLEKHG2Q9H7P9 1386 aa10.58□□□□□ -0.72
CFAP54-201ENST00000342887 SMC5Q8IY18 1101 aa10.58□□□□□ -0.72
CFAP54-201ENST00000342887 IL17RAQ96F46 866 aa10.58□□□□□ -0.72
CFAP54-201ENST00000342887 NUP188Q5SRE5 1749 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms