RNA–Protein interactions for RNA: ENST00000342075.8

PMS1-201, Transcript of PMS1 homolog 1, mismatch repair system component, humanhuman

TSL 2

Gene PMS1, Length 3,012 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMS1-201ENST00000342075 PPP2R1AP30153 589 aa18.85■□□□□ 0.61
PMS1-201ENST00000342075 MORC1Q86VD1 984 aa18.85■□□□□ 0.61
PMS1-201ENST00000342075 NUTM2GQ5VZR2 741 aa18.84■□□□□ 0.61
PMS1-201ENST00000342075 EDC4Q6P2E9 1401 aaKnown RBP18.84■□□□□ 0.61
PMS1-201ENST00000342075 POLR3AO14802 1390 aaPredicted RBP18.84■□□□□ 0.61
PMS1-201ENST00000342075 PLEKHG5O94827 1062 aa18.84■□□□□ 0.61
PMS1-201ENST00000342075 NPC1L1Q9UHC9 1359 aa18.83■□□□□ 0.6
PMS1-201ENST00000342075 FAM9BQ8IZU0 186 aa18.83■□□□□ 0.6
PMS1-201ENST00000342075 LTBP4Q8N2S1 1624 aa18.82■□□□□ 0.6
PMS1-201ENST00000342075 TTC21BQ7Z4L5 1316 aa18.82■□□□□ 0.6
PMS1-201ENST00000342075 PAK3O75914 559 aaPredicted RBP18.82■□□□□ 0.6
PMS1-201ENST00000342075 SOX12O15370 315 aa18.81■□□□□ 0.6
PMS1-201ENST00000342075 SSH2Q76I76 1423 aa18.8■□□□□ 0.6
PMS1-201ENST00000342075 ZNF692Q9BU19 519 aaPredicted RBP18.8■□□□□ 0.6
PMS1-201ENST00000342075 CADPS2Q86UW7 1296 aa18.8■□□□□ 0.6
PMS1-201ENST00000342075 ANKRD26Q9UPS8 1709 aa18.8■□□□□ 0.6
PMS1-201ENST00000342075 NCOA3Q9Y6Q9 1424 aa18.8■□□□□ 0.6
PMS1-201ENST00000342075 NLRP13Q86W25 1043 aa18.79■□□□□ 0.6
PMS1-201ENST00000342075 DCCP43146 1447 aa18.79■□□□□ 0.6
PMS1-201ENST00000342075 PIK3C2AO00443 1686 aa18.78■□□□□ 0.6
PMS1-201ENST00000342075 PSME1Q06323 249 aa18.78■□□□□ 0.6
PMS1-201ENST00000342075 SLAIN2Q9P270 581 aa18.76■□□□□ 0.59
PMS1-201ENST00000342075 NSD2O96028 1365 aa18.75■□□□□ 0.59
PMS1-201ENST00000342075 BRINP3Q76B58 766 aa18.75■□□□□ 0.59
PMS1-201ENST00000342075 BRD4O60885 1362 aaPredicted RBP18.75■□□□□ 0.59
PMS1-201ENST00000342075 MTHFSP49914 203 aa18.75■□□□□ 0.59
PMS1-201ENST00000342075 RRS1Q15050 365 aaKnown RBP18.74■□□□□ 0.59
PMS1-201ENST00000342075 LMOD2Q6P5Q4 547 aa18.74■□□□□ 0.59
PMS1-201ENST00000342075 PPM1GO15355 546 aaPredicted RBP18.74■□□□□ 0.59
PMS1-201ENST00000342075 ABTB2Q8N961 1025 aa18.74■□□□□ 0.59
PMS1-201ENST00000342075 COG3Q96JB2 828 aa18.74■□□□□ 0.59
PMS1-201ENST00000342075 MARF1Q9Y4F3 1742 aaKnown RBP18.73■□□□□ 0.59
PMS1-201ENST00000342075 PNISRQ8TF01 805 aaKnown RBP18.73■□□□□ 0.59
PMS1-201ENST00000342075 MAP2P11137 1827 aaKnown RBP18.73■□□□□ 0.59
PMS1-201ENST00000342075 EMILIN1Q9Y6C2 1016 aa18.73■□□□□ 0.59
PMS1-201ENST00000342075 OVOS2A0A0J9YW53 1432 aa18.72■□□□□ 0.59
PMS1-201ENST00000342075 OVOS2Q6IE36 1432 aa18.72■□□□□ 0.59
PMS1-201ENST00000342075 NLRP6P59044 892 aa18.72■□□□□ 0.59
PMS1-201ENST00000342075 KRT28Q7Z3Y7 464 aa18.72■□□□□ 0.59
PMS1-201ENST00000342075 KIF1AQ12756 1690 aa18.71■□□□□ 0.59
PMS1-201ENST00000342075 TRPM3Q9HCF6 1732 aaPredicted RBP18.7■□□□□ 0.58
PMS1-201ENST00000342075 POLKQ9UBT6 870 aa18.69■□□□□ 0.58
PMS1-201ENST00000342075 TTC21AQ8NDW8 1320 aa18.69■□□□□ 0.58
PMS1-201ENST00000342075 SHPRHQ149N8 1683 aa18.66■□□□□ 0.58
PMS1-201ENST00000342075 ADAMTS8Q9UP79 889 aa18.66■□□□□ 0.58
PMS1-201ENST00000342075 PXDNQ92626 1479 aa18.65■□□□□ 0.58
PMS1-201ENST00000342075 HNRNPUQ00839 825 aaKnown RBP eCLIP18.64■□□□□ 0.57
PMS1-201ENST00000342075 CABLES1Q8TDN4 633 aa18.64■□□□□ 0.57
PMS1-201ENST00000342075 PEAK1Q9H792 1746 aa18.64■□□□□ 0.57
PMS1-201ENST00000342075 ROBO1Q9Y6N7 1651 aa18.64■□□□□ 0.57
PMS1-201ENST00000342075 PIP4K2BP78356 416 aa18.64■□□□□ 0.57
PMS1-201ENST00000342075 NPHP3Q7Z494 1330 aa18.64■□□□□ 0.57
PMS1-201ENST00000342075 ZBTB7CA1YPR0 619 aa18.63■□□□□ 0.57
PMS1-201ENST00000342075 ALS2Q96Q42 1657 aa18.63■□□□□ 0.57
PMS1-201ENST00000342075 USP31Q70CQ4 1352 aa18.63■□□□□ 0.57
PMS1-201ENST00000342075 SCAF1Q9H7N4 1312 aaKnown RBP18.62■□□□□ 0.57
PMS1-201ENST00000342075 COL3A1P02461 1466 aaPredicted RBP18.62■□□□□ 0.57
PMS1-201ENST00000342075 CCDC146Q8IYE0 955 aa18.62■□□□□ 0.57
PMS1-201ENST00000342075 SALL2Q9Y467 1007 aaPredicted RBP18.61■□□□□ 0.57
PMS1-201ENST00000342075 MAP3K19Q56UN5 1328 aa18.61■□□□□ 0.57
PMS1-201ENST00000342075 WDR43Q15061 677 aaKnown RBP eCLIP18.6■□□□□ 0.57
PMS1-201ENST00000342075 HSP90AB2PQ58FF8 381 aa18.6■□□□□ 0.57
PMS1-201ENST00000342075 MED1Q15648 1581 aaPredicted RBP18.59■□□□□ 0.57
PMS1-201ENST00000342075 AATKQ6ZMQ8 1374 aa18.59■□□□□ 0.57
PMS1-201ENST00000342075 USP54Q70EL1 1684 aa18.58■□□□□ 0.57
PMS1-201ENST00000342075 TNS3Q68CZ2 1445 aa18.58■□□□□ 0.57
PMS1-201ENST00000342075 LTN1O94822 1766 aa18.58■□□□□ 0.56
PMS1-201ENST00000342075 U2SURPO15042 1029 aaKnown RBP18.58■□□□□ 0.56
PMS1-201ENST00000342075 NHSL1Q5SYE7 1610 aa18.58■□□□□ 0.56
PMS1-201ENST00000342075 SPATA31A3Q5VYP0 1347 aa18.58■□□□□ 0.56
PMS1-201ENST00000342075 SOS2Q07890 1332 aaPredicted RBP18.57■□□□□ 0.56
PMS1-201ENST00000342075 NFAT5O94916 1531 aa18.57■□□□□ 0.56
PMS1-201ENST00000342075 CFAP53Q96M91 514 aa18.57■□□□□ 0.56
PMS1-201ENST00000342075 UBAP1LF5GYI3 381 aa18.56■□□□□ 0.56
PMS1-201ENST00000342075 SMG6Q86US8 1419 aaKnown RBP18.56■□□□□ 0.56
PMS1-201ENST00000342075 PNPLA6Q8IY17 1366 aa18.56■□□□□ 0.56
PMS1-201ENST00000342075 GCP02774 474 aa18.56■□□□□ 0.56
PMS1-201ENST00000342075 ZC3H6P61129 1189 aaKnown RBP18.56■□□□□ 0.56
PMS1-201ENST00000342075 U2AF1L5P0DN76 240 aaPredicted RBP18.55■□□□□ 0.56
PMS1-201ENST00000342075 U2AF1Q01081 240 aaKnown RBP eCLIP18.55■□□□□ 0.56
PMS1-201ENST00000342075 SBNO1A3KN83 1393 aa18.55■□□□□ 0.56
PMS1-201ENST00000342075 CDK12Q9NYV4 1490 aaPredicted RBP18.54■□□□□ 0.56
PMS1-201ENST00000342075 DIAPH1O60610 1272 aaKnown RBP18.54■□□□□ 0.56
PMS1-201ENST00000342075 USP19O94966 1318 aa18.54■□□□□ 0.56
PMS1-201ENST00000342075 AMPHP49418 695 aa18.53■□□□□ 0.56
PMS1-201ENST00000342075 LTV1Q96GA3 475 aaPredicted RBP18.53■□□□□ 0.56
PMS1-201ENST00000342075 HMOX1P09601 288 aa18.53■□□□□ 0.56
PMS1-201ENST00000342075 SLIT3O75094 1523 aa18.53■□□□□ 0.56
PMS1-201ENST00000342075 PHRF1Q9P1Y6 1649 aaKnown RBP18.52■□□□□ 0.56
PMS1-201ENST00000342075 EIF4A2Q14240 407 aaKnown RBP18.52■□□□□ 0.56
PMS1-201ENST00000342075 CERKQ8TCT0 537 aa18.52■□□□□ 0.56
PMS1-201ENST00000342075 BLMP54132 1417 aaPredicted RBP18.52■□□□□ 0.55
PMS1-201ENST00000342075 IL13P35225 146 aa18.52■□□□□ 0.55
PMS1-201ENST00000342075 CRYBG1Q9Y4K1 1723 aa18.51■□□□□ 0.55
PMS1-201ENST00000342075 HOXC9P31274 260 aa18.51■□□□□ 0.55
PMS1-201ENST00000342075 TOM1O60784 492 aa18.51■□□□□ 0.55
PMS1-201ENST00000342075 CHRNA2Q15822 529 aa18.5■□□□□ 0.55
PMS1-201ENST00000342075 RGPD5Q99666 1765 aa18.5■□□□□ 0.55
PMS1-201ENST00000342075 AEBP1Q8IUX7 1158 aa18.49■□□□□ 0.55
PMS1-201ENST00000342075 AXIN2Q9Y2T1 843 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 150.1 ms