RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 BRD4O60885 1362 aaPredicted RBP10.41□□□□□ -0.74
RTN3-202ENST00000339997 KINO60870 393 aaKnown RBP10.41□□□□□ -0.74
RTN3-202ENST00000339997 MBD3O95983 291 aa10.41□□□□□ -0.74
RTN3-202ENST00000339997 MAP7D2Q96T17 732 aa10.41□□□□□ -0.74
RTN3-202ENST00000339997 SPDYE4A6NLX3 237 aa10.41□□□□□ -0.74
RTN3-202ENST00000339997 VGFO15240 615 aaPredicted RBP10.41□□□□□ -0.74
RTN3-202ENST00000339997 SMARCA5O60264 1052 aaPredicted RBP10.41□□□□□ -0.74
RTN3-202ENST00000339997 SSFA2P28290 1259 aa10.41□□□□□ -0.74
RTN3-202ENST00000339997 CCDC70Q6NSX1 233 aa10.41□□□□□ -0.74
RTN3-202ENST00000339997 MIS18AQ9NYP9 233 aa10.41□□□□□ -0.74
RTN3-202ENST00000339997 G3V3G9 751 aa10.4□□□□□ -0.74
RTN3-202ENST00000339997 AXDND1Q5T1B0 1012 aaPredicted RBP10.4□□□□□ -0.74
RTN3-202ENST00000339997 DCAF8Q5TAQ9 597 aa10.4□□□□□ -0.74
RTN3-202ENST00000339997 CCDC112Q8NEF3 446 aa10.4□□□□□ -0.74
RTN3-202ENST00000339997 RUFY1Q96T51 708 aa10.4□□□□□ -0.74
RTN3-202ENST00000339997 PLCD4Q9BRC7 762 aa10.4□□□□□ -0.74
RTN3-202ENST00000339997 TBC1D2Q9BYX2 928 aa10.4□□□□□ -0.74
RTN3-202ENST00000339997 IGSF3O75054 1194 aa10.4□□□□□ -0.74
RTN3-202ENST00000339997 RABEP1Q15276 862 aa10.4□□□□□ -0.74
RTN3-202ENST00000339997 RALYLQ86SE5 291 aaKnown RBP10.4□□□□□ -0.74
RTN3-202ENST00000339997 ZFP91Q96JP5 570 aaPredicted RBP10.4□□□□□ -0.74
RTN3-202ENST00000339997 EXOC6BQ9Y2D4 811 aa10.4□□□□□ -0.74
RTN3-202ENST00000339997 RRP9O43818 475 aaKnown RBP10.4□□□□□ -0.74
RTN3-202ENST00000339997 RIC3Q7Z5B4 369 aa10.4□□□□□ -0.74
RTN3-202ENST00000339997 TTC5Q8N0Z6 440 aa10.4□□□□□ -0.74
RTN3-202ENST00000339997 CLASRPQ8N2M8 674 aaKnown RBP10.4□□□□□ -0.74
RTN3-202ENST00000339997 PDE3AQ14432 1141 aa10.4□□□□□ -0.75
RTN3-202ENST00000339997 AEBP1Q8IUX7 1158 aa10.4□□□□□ -0.75
RTN3-202ENST00000339997 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.4□□□□□ -0.75
RTN3-202ENST00000339997 RRP12Q5JTH9 1297 aaKnown RBP10.39□□□□□ -0.75
RTN3-202ENST00000339997 CNKSR2Q8WXI2 1034 aa10.39□□□□□ -0.75
RTN3-202ENST00000339997 DDX11Q96FC9 970 aa10.39□□□□□ -0.75
RTN3-202ENST00000339997 CARMIL2Q6F5E8 1435 aa10.39□□□□□ -0.75
RTN3-202ENST00000339997 ZSCAN30Q86W11 494 aa10.39□□□□□ -0.75
RTN3-202ENST00000339997 CAGE1Q8TC20 777 aa10.39□□□□□ -0.75
RTN3-202ENST00000339997 HMGN5P82970 282 aaKnown RBP10.39□□□□□ -0.75
RTN3-202ENST00000339997 HSP90AB3PQ58FF7 597 aa10.39□□□□□ -0.75
RTN3-202ENST00000339997 CHD1LQ86WJ1 897 aa10.39□□□□□ -0.75
RTN3-202ENST00000339997 ME1P48163 572 aa10.39□□□□□ -0.75
RTN3-202ENST00000339997 CWC27Q6UX04 472 aaKnown RBP10.39□□□□□ -0.75
RTN3-202ENST00000339997 ATF7IPQ6VMQ6 1270 aa10.39□□□□□ -0.75
RTN3-202ENST00000339997 TMEM57Q8N5G2 664 aa10.39□□□□□ -0.75
RTN3-202ENST00000339997 CHMP4AQ9BY43 222 aa10.39□□□□□ -0.75
RTN3-202ENST00000339997 FAM193AP78312 1265 aa10.38□□□□□ -0.75
RTN3-202ENST00000339997 TSPYL1Q9H0U9 437 aa10.38□□□□□ -0.75
RTN3-202ENST00000339997 TNMDQ9H2S6 317 aa10.38□□□□□ -0.75
RTN3-202ENST00000339997 UACAQ9BZF9 1416 aa10.38□□□□□ -0.75
RTN3-202ENST00000339997 LARP1BQ659C4 914 aaKnown RBP10.38□□□□□ -0.75
RTN3-202ENST00000339997 AFAP1Q8N556 730 aa10.38□□□□□ -0.75
RTN3-202ENST00000339997 ANKRD20A12PQ8NF67 263 aa10.38□□□□□ -0.75
RTN3-202ENST00000339997 ZNF830Q96NB3 372 aaPredicted RBP10.38□□□□□ -0.75
RTN3-202ENST00000339997 TMX1Q9H3N1 280 aa10.38□□□□□ -0.75
RTN3-202ENST00000339997 NCAPD3P42695 1498 aa10.38□□□□□ -0.75
RTN3-202ENST00000339997 ERC2O15083 957 aa10.38□□□□□ -0.75
RTN3-202ENST00000339997 MVPQ14764 893 aaKnown RBP10.38□□□□□ -0.75
RTN3-202ENST00000339997 USP25Q9UHP3 1055 aa10.38□□□□□ -0.75
RTN3-202ENST00000339997 DCTN1Q14203 1278 aa10.38□□□□□ -0.75
RTN3-202ENST00000339997 SERPINC1P01008 464 aa10.37□□□□□ -0.75
RTN3-202ENST00000339997 CGNQ9P2M7 1197 aaKnown RBP10.37□□□□□ -0.75
RTN3-202ENST00000339997 RBM27Q9P2N5 1060 aaKnown RBP10.37□□□□□ -0.75
RTN3-202ENST00000339997 MTERF4Q7Z6M4 381 aaKnown RBP10.37□□□□□ -0.75
RTN3-202ENST00000339997 PDCL2Q8N4E4 241 aa10.37□□□□□ -0.75
RTN3-202ENST00000339997 EID1Q9Y6B2 187 aa10.37□□□□□ -0.75
RTN3-202ENST00000339997 FGD6Q6ZV73 1430 aa10.37□□□□□ -0.75
RTN3-202ENST00000339997 STK38Q15208 465 aa10.36□□□□□ -0.75
RTN3-202ENST00000339997 SULT6B1Q6IMI4 303 aa10.36□□□□□ -0.75
RTN3-202ENST00000339997 CENPHQ9H3R5 247 aa10.36□□□□□ -0.75
RTN3-202ENST00000339997 TRMT1Q9NXH9 659 aaKnown RBP10.36□□□□□ -0.75
RTN3-202ENST00000339997 CFTRP13569 1480 aa10.36□□□□□ -0.75
RTN3-202ENST00000339997 OLFM4Q6UX06 510 aa10.36□□□□□ -0.75
RTN3-202ENST00000339997 VPS37DQ86XT2 251 aa10.36□□□□□ -0.75
RTN3-202ENST00000339997 CNTROBQ8N137 903 aa10.36□□□□□ -0.75
RTN3-202ENST00000339997 TNPO1Q92973 898 aaKnown RBP10.36□□□□□ -0.75
RTN3-202ENST00000339997 CCDC192P0DO97 292 aa10.36□□□□□ -0.75
RTN3-202ENST00000339997 NUTM1Q86Y26 1132 aa10.36□□□□□ -0.75
RTN3-202ENST00000339997 CCDC85AQ96PX6 553 aaPredicted RBP10.36□□□□□ -0.75
RTN3-202ENST00000339997 TRIM34Q9BYJ4 488 aa10.36□□□□□ -0.75
RTN3-202ENST00000339997 CCDC66A2RUB6 948 aa10.36□□□□□ -0.75
RTN3-202ENST00000339997 OFD1O75665 1012 aa10.36□□□□□ -0.75
RTN3-202ENST00000339997 NLRP6P59044 892 aa10.36□□□□□ -0.75
RTN3-202ENST00000339997 TSHZ3Q63HK5 1081 aa10.36□□□□□ -0.75
RTN3-202ENST00000339997 CFAP43Q8NDM7 1665 aa10.36□□□□□ -0.75
RTN3-202ENST00000339997 SAFBQ15424 915 aaKnown RBP eCLIP10.35□□□□□ -0.75
RTN3-202ENST00000339997 CKAP2LQ8IYA6 745 aa10.35□□□□□ -0.75
RTN3-202ENST00000339997 RBM25P49756 843 aaKnown RBP10.35□□□□□ -0.75
RTN3-202ENST00000339997 KLHL34Q8N239 644 aa10.35□□□□□ -0.75
RTN3-202ENST00000339997 NAT10Q9H0A0 1025 aaKnown RBP10.35□□□□□ -0.75
RTN3-202ENST00000339997 IGHDP01880 384 aa10.35□□□□□ -0.75
RTN3-202ENST00000339997 PIBF1Q8WXW3 757 aa10.35□□□□□ -0.75
RTN3-202ENST00000339997 C16orf45Q96MC5 204 aaPredicted RBP10.35□□□□□ -0.75
RTN3-202ENST00000339997 MAPKBP1O60336 1514 aa10.35□□□□□ -0.75
RTN3-202ENST00000339997 RSPH4AQ5TD94 716 aa10.35□□□□□ -0.75
RTN3-202ENST00000339997 POLR3GO15318 223 aaPredicted RBP10.34□□□□□ -0.75
RTN3-202ENST00000339997 RRS1Q15050 365 aaKnown RBP10.34□□□□□ -0.75
RTN3-202ENST00000339997 JAKMIP1Q96N16 626 aaKnown RBP10.34□□□□□ -0.75
RTN3-202ENST00000339997 ZFYVE27Q5T4F4 411 aa10.34□□□□□ -0.75
RTN3-202ENST00000339997 NLRP2Q9NX02 1062 aa10.34□□□□□ -0.75
RTN3-202ENST00000339997 SMG6Q86US8 1419 aaKnown RBP10.34□□□□□ -0.75
RTN3-202ENST00000339997 SPINK5Q9NQ38 1064 aaPredicted RBP10.34□□□□□ -0.75
RTN3-202ENST00000339997 DDX58O95786 925 aaKnown RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms