RNA–Protein interactions for RNA: ENST00000335793.3

CDC42EP4-201, Transcript of CDC42 effector protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDC42EP4, Length 3,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP4-201ENST00000335793 CD109Q6YHK3 1445 aa20.78■□□□□ 0.92
CDC42EP4-201ENST00000335793 ANKRD36BQ8N2N9 1353 aa20.78■□□□□ 0.92
CDC42EP4-201ENST00000335793 HMOX1P09601 288 aa20.77■□□□□ 0.92
CDC42EP4-201ENST00000335793 ZNF518AQ6AHZ1 1483 aa20.76■□□□□ 0.91
CDC42EP4-201ENST00000335793 CABP1Q9NZU7 370 aa20.76■□□□□ 0.91
CDC42EP4-201ENST00000335793 PHF23Q9BUL5 403 aaPredicted RBP20.76■□□□□ 0.91
CDC42EP4-201ENST00000335793 FYB1O15117 783 aa20.75■□□□□ 0.91
CDC42EP4-201ENST00000335793 EFCAB6Q5THR3 1501 aa20.75■□□□□ 0.91
CDC42EP4-201ENST00000335793 HSCBQ8IWL3 235 aa20.75■□□□□ 0.91
CDC42EP4-201ENST00000335793 BCL11BQ9C0K0 894 aaPredicted RBP20.74■□□□□ 0.91
CDC42EP4-201ENST00000335793 THUMPD2Q9BTF0 503 aaKnown RBP20.73■□□□□ 0.91
CDC42EP4-201ENST00000335793 TRIM35Q9UPQ4 493 aa20.73■□□□□ 0.91
CDC42EP4-201ENST00000335793 A0A1W2PP64 1363 aa20.73■□□□□ 0.91
CDC42EP4-201ENST00000335793 ARAP3Q8WWN8 1544 aa20.73■□□□□ 0.91
CDC42EP4-201ENST00000335793 PRKAR2BP31323 418 aa20.73■□□□□ 0.91
CDC42EP4-201ENST00000335793 ANKRD45Q5TZF3 282 aa20.72■□□□□ 0.91
CDC42EP4-201ENST00000335793 CDK19Q9BWU1 502 aa20.72■□□□□ 0.91
CDC42EP4-201ENST00000335793 C1orf115Q9H7X2 142 aa20.72■□□□□ 0.91
CDC42EP4-201ENST00000335793 DEPDC5O75140 1603 aa20.72■□□□□ 0.91
CDC42EP4-201ENST00000335793 INO80Q9ULG1 1556 aaPredicted RBP20.72■□□□□ 0.91
CDC42EP4-201ENST00000335793 CT47B1P0C2W7 299 aaPredicted RBP20.7■□□□□ 0.9
CDC42EP4-201ENST00000335793 FOXD4L1Q9NU39 408 aa20.7■□□□□ 0.9
CDC42EP4-201ENST00000335793 PANK2Q9BZ23 570 aa20.7■□□□□ 0.9
CDC42EP4-201ENST00000335793 KIAA1210Q9ULL0 1709 aa20.7■□□□□ 0.9
CDC42EP4-201ENST00000335793 MLECQ14165 292 aa20.7■□□□□ 0.9
CDC42EP4-201ENST00000335793 VWDEQ8N2E2 1590 aa20.69■□□□□ 0.9
CDC42EP4-201ENST00000335793 FBXO31Q5XUX0 539 aaPredicted RBP20.69■□□□□ 0.9
CDC42EP4-201ENST00000335793 PPRC1Q5VV67 1664 aaKnown RBP20.69■□□□□ 0.9
CDC42EP4-201ENST00000335793 KIF16BQ96L93 1317 aa20.68■□□□□ 0.9
CDC42EP4-201ENST00000335793 NSD2O96028 1365 aa20.68■□□□□ 0.9
CDC42EP4-201ENST00000335793 HSP90AB1P08238 724 aaKnown RBP20.68■□□□□ 0.9
CDC42EP4-201ENST00000335793 SLC52A1Q9NWF4 448 aa20.67■□□□□ 0.9
CDC42EP4-201ENST00000335793 L1TD1Q5T7N2 865 aaKnown RBP20.67■□□□□ 0.9
CDC42EP4-201ENST00000335793 PLEKHF1Q96S99 279 aa20.67■□□□□ 0.9
CDC42EP4-201ENST00000335793 MROH2AA6NES4 1674 aa20.67■□□□□ 0.9
CDC42EP4-201ENST00000335793 WAPLQ7Z5K2 1190 aa20.66■□□□□ 0.9
CDC42EP4-201ENST00000335793 CHMP5Q9NZZ3 219 aa20.66■□□□□ 0.9
CDC42EP4-201ENST00000335793 PLPPR3Q6T4P5 718 aa20.66■□□□□ 0.9
CDC42EP4-201ENST00000335793 MROH1Q8NDA8 1641 aa20.65■□□□□ 0.9
CDC42EP4-201ENST00000335793 GOLGA6L3A6NEY3 463 aa20.65■□□□□ 0.9
CDC42EP4-201ENST00000335793 HDAC1Q13547 482 aaPredicted RBP20.65■□□□□ 0.9
CDC42EP4-201ENST00000335793 MCM4P33991 863 aa20.64■□□□□ 0.89
CDC42EP4-201ENST00000335793 PUS7Q96PZ0 661 aaKnown RBP20.64■□□□□ 0.89
CDC42EP4-201ENST00000335793 ABCA9Q8IUA7 1624 aa20.64■□□□□ 0.89
CDC42EP4-201ENST00000335793 ADGRB3O60242 1522 aa20.64■□□□□ 0.89
CDC42EP4-201ENST00000335793 NRXN1Q9ULB1 1477 aa20.64■□□□□ 0.89
CDC42EP4-201ENST00000335793 ANTXR1Q9H6X2 564 aa20.63■□□□□ 0.89
CDC42EP4-201ENST00000335793 ATAD2Q6PL18 1390 aa20.63■□□□□ 0.89
CDC42EP4-201ENST00000335793 ZBTB40Q9NUA8 1239 aa20.63■□□□□ 0.89
CDC42EP4-201ENST00000335793 QRICH2Q9H0J4 1663 aa20.63■□□□□ 0.89
CDC42EP4-201ENST00000335793 CHD1LQ86WJ1 897 aa20.62■□□□□ 0.89
CDC42EP4-201ENST00000335793 KIDINS220Q9ULH0 1771 aa20.62■□□□□ 0.89
CDC42EP4-201ENST00000335793 APBB1O00213 710 aa20.62■□□□□ 0.89
CDC42EP4-201ENST00000335793 FCHSD2O94868 740 aa20.61■□□□□ 0.89
CDC42EP4-201ENST00000335793 IQSEC2Q5JU85 1478 aa20.61■□□□□ 0.89
CDC42EP4-201ENST00000335793 SOX12O15370 315 aa20.61■□□□□ 0.89
CDC42EP4-201ENST00000335793 SMC5Q8IY18 1101 aa20.61■□□□□ 0.89
CDC42EP4-201ENST00000335793 PHACTR3Q96KR7 559 aa20.61■□□□□ 0.89
CDC42EP4-201ENST00000335793 POGZQ7Z3K3 1410 aa20.6■□□□□ 0.89
CDC42EP4-201ENST00000335793 TRAK2O60296 914 aa20.6■□□□□ 0.89
CDC42EP4-201ENST00000335793 EMILIN1Q9Y6C2 1016 aa20.6■□□□□ 0.89
CDC42EP4-201ENST00000335793 ABCC11Q96J66 1382 aa20.6■□□□□ 0.89
CDC42EP4-201ENST00000335793 ZHX1Q9UKY1 873 aaPredicted RBP20.59■□□□□ 0.89
CDC42EP4-201ENST00000335793 TSPYL6Q8N831 410 aa20.59■□□□□ 0.89
CDC42EP4-201ENST00000335793 ADGRB1O14514 1584 aa20.59■□□□□ 0.89
CDC42EP4-201ENST00000335793 SETBP1Q9Y6X0 1596 aa20.58■□□□□ 0.89
CDC42EP4-201ENST00000335793 TSPOAP1O95153 1857 aa20.57■□□□□ 0.88
CDC42EP4-201ENST00000335793 NUTM2FA1L443 756 aa20.57■□□□□ 0.88
CDC42EP4-201ENST00000335793 XRCC6P12956 609 aaKnown RBP eCLIP20.57■□□□□ 0.88
CDC42EP4-201ENST00000335793 POLKQ9UBT6 870 aa20.57■□□□□ 0.88
CDC42EP4-201ENST00000335793 IL16Q14005 1332 aa20.57■□□□□ 0.88
CDC42EP4-201ENST00000335793 TULP4Q9NRJ4 1543 aa20.56■□□□□ 0.88
CDC42EP4-201ENST00000335793 DCTN1Q14203 1278 aa20.56■□□□□ 0.88
CDC42EP4-201ENST00000335793 RRS1Q15050 365 aaKnown RBP20.56■□□□□ 0.88
CDC42EP4-201ENST00000335793 NUCB1Q02818 461 aa20.56■□□□□ 0.88
CDC42EP4-201ENST00000335793 CALD1Q05682 793 aaKnown RBP20.56■□□□□ 0.88
CDC42EP4-201ENST00000335793 CHMP4BQ9H444 224 aaKnown RBP20.56■□□□□ 0.88
CDC42EP4-201ENST00000335793 ZRANB1Q9UGI0 708 aa20.56■□□□□ 0.88
CDC42EP4-201ENST00000335793 SHPRHQ149N8 1683 aa20.55■□□□□ 0.88
CDC42EP4-201ENST00000335793 CLCN1P35523 988 aa20.55■□□□□ 0.88
CDC42EP4-201ENST00000335793 ALDH1L2Q3SY69 923 aa20.55■□□□□ 0.88
CDC42EP4-201ENST00000335793 GNAI1P63096 354 aa20.55■□□□□ 0.88
CDC42EP4-201ENST00000335793 NFE2L2Q16236 605 aa20.55■□□□□ 0.88
CDC42EP4-201ENST00000335793 TWISTNBQ3B726 338 aaPredicted RBP20.55■□□□□ 0.88
CDC42EP4-201ENST00000335793 NME9Q86XW9 330 aa20.55■□□□□ 0.88
CDC42EP4-201ENST00000335793 PRDM10Q9NQV6 1147 aa20.55■□□□□ 0.88
CDC42EP4-201ENST00000335793 GLI2P10070 1586 aa20.55■□□□□ 0.88
CDC42EP4-201ENST00000335793 NEURL4Q96JN8 1562 aa20.54■□□□□ 0.88
CDC42EP4-201ENST00000335793 LMTK2Q8IWU2 1503 aa20.54■□□□□ 0.88
CDC42EP4-201ENST00000335793 NCBP3Q53F19 620 aaKnown RBP20.54■□□□□ 0.88
CDC42EP4-201ENST00000335793 FAM83GA6ND36 823 aa20.54■□□□□ 0.88
CDC42EP4-201ENST00000335793 ABCC3O15438 1527 aa20.53■□□□□ 0.88
CDC42EP4-201ENST00000335793 ESF1Q9H501 851 aaKnown RBP20.53■□□□□ 0.88
CDC42EP4-201ENST00000335793 NLRP1Q9C000 1473 aa20.52■□□□□ 0.88
CDC42EP4-201ENST00000335793 MLH3Q9UHC1 1453 aa20.52■□□□□ 0.88
CDC42EP4-201ENST00000335793 PRDM4Q9UKN5 801 aa20.52■□□□□ 0.88
CDC42EP4-201ENST00000335793 TXNDC2Q86VQ3 553 aa20.52■□□□□ 0.88
CDC42EP4-201ENST00000335793 VAMP4O75379 141 aa20.52■□□□□ 0.87
CDC42EP4-201ENST00000335793 COG3Q96JB2 828 aa20.52■□□□□ 0.87
CDC42EP4-201ENST00000335793 YTHDC2Q9H6S0 1430 aaKnown RBP20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms