RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 FSD1Q9BTV5 496 aa9.42□□□□□ -0.9
CIITA-201ENST00000324288 KINO60870 393 aaKnown RBP9.42□□□□□ -0.9
CIITA-201ENST00000324288 ZRSR2Q15696 482 aaKnown RBP9.41□□□□□ -0.9
CIITA-201ENST00000324288 SEPT7Q16181 437 aaKnown RBP9.41□□□□□ -0.9
CIITA-201ENST00000324288 SRRTQ9BXP5 876 aaKnown RBP9.41□□□□□ -0.9
CIITA-201ENST00000324288 RNF187Q5TA31 235 aaPredicted RBP9.41□□□□□ -0.9
CIITA-201ENST00000324288 TMX1Q9H3N1 280 aa9.41□□□□□ -0.9
CIITA-201ENST00000324288 CLASRPQ8N2M8 674 aaKnown RBP9.41□□□□□ -0.9
CIITA-201ENST00000324288 DDX58O95786 925 aaKnown RBP9.41□□□□□ -0.9
CIITA-201ENST00000324288 PPFIBP1Q86W92 1011 aa9.41□□□□□ -0.9
CIITA-201ENST00000324288 ZHX3Q9H4I2 956 aa9.41□□□□□ -0.9
CIITA-201ENST00000324288 GOLGA6L10A6NI86 522 aa9.41□□□□□ -0.9
CIITA-201ENST00000324288 MAP4K4O95819 1239 aaPredicted RBP9.41□□□□□ -0.9
CIITA-201ENST00000324288 XPCQ01831 940 aaPredicted RBP9.41□□□□□ -0.9
CIITA-201ENST00000324288 PDCL2Q8N4E4 241 aa9.41□□□□□ -0.9
CIITA-201ENST00000324288 TDRD9Q8NDG6 1382 aaKnown RBP9.41□□□□□ -0.9
CIITA-201ENST00000324288 BRMS1Q9HCU9 246 aa9.41□□□□□ -0.9
CIITA-201ENST00000324288 MAGEC2Q9UBF1 373 aaPredicted RBP9.41□□□□□ -0.9
CIITA-201ENST00000324288 ESPNB1AK53 854 aa9.4□□□□□ -0.9
CIITA-201ENST00000324288 DIAPH1O60610 1272 aaKnown RBP9.4□□□□□ -0.9
CIITA-201ENST00000324288 MBD3O95983 291 aa9.4□□□□□ -0.9
CIITA-201ENST00000324288 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.4□□□□□ -0.9
CIITA-201ENST00000324288 SPDYE4A6NLX3 237 aa9.4□□□□□ -0.9
CIITA-201ENST00000324288 CDK5RAP3Q96JB5 506 aa9.4□□□□□ -0.9
CIITA-201ENST00000324288 KRT18P05783 430 aaKnown RBP9.4□□□□□ -0.9
CIITA-201ENST00000324288 STK3Q13188 491 aa9.4□□□□□ -0.9
CIITA-201ENST00000324288 TNMDQ9H2S6 317 aa9.4□□□□□ -0.9
CIITA-201ENST00000324288 LRRFIP2Q9Y608 721 aaKnown RBP9.4□□□□□ -0.9
CIITA-201ENST00000324288 NLRP2Q9NX02 1062 aa9.4□□□□□ -0.91
CIITA-201ENST00000324288 RSPH4AQ5TD94 716 aa9.4□□□□□ -0.91
CIITA-201ENST00000324288 SPINK5Q9NQ38 1064 aaPredicted RBP9.4□□□□□ -0.91
CIITA-201ENST00000324288 ERC2O15083 957 aa9.39□□□□□ -0.91
CIITA-201ENST00000324288 ERLIN2O94905 339 aa9.39□□□□□ -0.91
CIITA-201ENST00000324288 CCDC102AQ96A19 550 aa9.39□□□□□ -0.91
CIITA-201ENST00000324288 PDZRN3Q9UPQ7 1066 aa9.39□□□□□ -0.91
CIITA-201ENST00000324288 NEK4P51957 841 aa9.39□□□□□ -0.91
CIITA-201ENST00000324288 PIBF1Q8WXW3 757 aa9.39□□□□□ -0.91
CIITA-201ENST00000324288 NINLQ9Y2I6 1382 aa9.39□□□□□ -0.91
CIITA-201ENST00000324288 SEPT11Q9NVA2 429 aaKnown RBP9.39□□□□□ -0.91
CIITA-201ENST00000324288 GTF2F1P35269 517 aaKnown RBP eCLIP9.39□□□□□ -0.91
CIITA-201ENST00000324288 MYO6Q9UM54 1294 aa9.38□□□□□ -0.91
CIITA-201ENST00000324288 ROCK1Q13464 1354 aa9.38□□□□□ -0.91
CIITA-201ENST00000324288 UBTFL1P0CB47 393 aaPredicted RBP9.38□□□□□ -0.91
CIITA-201ENST00000324288 CCP110O43303 1012 aa9.38□□□□□ -0.91
CIITA-201ENST00000324288 SERPINC1P01008 464 aa9.38□□□□□ -0.91
CIITA-201ENST00000324288 CCAR1Q8IX12 1150 aaKnown RBP9.38□□□□□ -0.91
CIITA-201ENST00000324288 SMARCE1Q969G3 411 aa9.38□□□□□ -0.91
CIITA-201ENST00000324288 STK38Q15208 465 aa9.38□□□□□ -0.91
CIITA-201ENST00000324288 CDCA7LQ96GN5 454 aa9.38□□□□□ -0.91
CIITA-201ENST00000324288 API5Q9BZZ5 524 aaKnown RBP9.38□□□□□ -0.91
CIITA-201ENST00000324288 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.38□□□□□ -0.91
CIITA-201ENST00000324288 PRKRIP1Q9H875 184 aaPredicted RBP9.37□□□□□ -0.91
CIITA-201ENST00000324288 CECR2Q9BXF3 1484 aa9.37□□□□□ -0.91
CIITA-201ENST00000324288 ZBTB9Q96C00 473 aa9.37□□□□□ -0.91
CIITA-201ENST00000324288 CABP2Q9NPB3 220 aa9.37□□□□□ -0.91
CIITA-201ENST00000324288 MCM4P33991 863 aa9.37□□□□□ -0.91
CIITA-201ENST00000324288 ZMYND15Q9H091 742 aa9.37□□□□□ -0.91
CIITA-201ENST00000324288 INCENPQ9NQS7 918 aa9.37□□□□□ -0.91
CIITA-201ENST00000324288 EIF3JO75822 258 aaKnown RBP9.37□□□□□ -0.91
CIITA-201ENST00000324288 GOLGA6L10A0A0M3HER8 536 aa9.36□□□□□ -0.91
CIITA-201ENST00000324288 FILIP1LQ4L180 1135 aa9.36□□□□□ -0.91
CIITA-201ENST00000324288 LRRCC1Q9C099 1032 aa9.36□□□□□ -0.91
CIITA-201ENST00000324288 SSR1P43307 286 aaKnown RBP9.36□□□□□ -0.91
CIITA-201ENST00000324288 CNTROBQ8N137 903 aa9.36□□□□□ -0.91
CIITA-201ENST00000324288 CCDC18Q5T9S5 1454 aa9.36□□□□□ -0.91
CIITA-201ENST00000324288 FILIP1Q7Z7B0 1213 aa9.36□□□□□ -0.91
CIITA-201ENST00000324288 SIL1Q9H173 461 aa9.36□□□□□ -0.91
CIITA-201ENST00000324288 PPP4R3BQ5MIZ7 849 aa9.36□□□□□ -0.91
CIITA-201ENST00000324288 CCDC88BA6NC98 1476 aa9.36□□□□□ -0.91
CIITA-201ENST00000324288 SYCP1Q15431 976 aa9.35□□□□□ -0.91
CIITA-201ENST00000324288 ZNHIT6Q9NWK9 470 aaKnown RBP9.35□□□□□ -0.91
CIITA-201ENST00000324288 BCCIPQ9P287 314 aaKnown RBP eCLIP9.35□□□□□ -0.91
CIITA-201ENST00000324288 GGNBP2Q9H3C7 697 aa9.35□□□□□ -0.91
CIITA-201ENST00000324288 STRN4Q9NRL3 753 aa9.35□□□□□ -0.91
CIITA-201ENST00000324288 TRMT1Q9NXH9 659 aaKnown RBP9.35□□□□□ -0.91
CIITA-201ENST00000324288 SYCE3A1L190 88 aa9.35□□□□□ -0.91
CIITA-201ENST00000324288 RBM42Q9BTD8 480 aaKnown RBP9.35□□□□□ -0.91
CIITA-201ENST00000324288 ATP2C2O75185 946 aa9.35□□□□□ -0.91
CIITA-201ENST00000324288 XBP1P17861 261 aa9.35□□□□□ -0.91
CIITA-201ENST00000324288 TANGO6Q9C0B7 1094 aa9.35□□□□□ -0.91
CIITA-201ENST00000324288 CCDC192P0DO97 292 aa9.34□□□□□ -0.91
CIITA-201ENST00000324288 FAM107BQ9H098 131 aa9.34□□□□□ -0.91
CIITA-201ENST00000324288 RAI14Q9P0K7 980 aa9.34□□□□□ -0.91
CIITA-201ENST00000324288 SURF6O75683 361 aaKnown RBP9.34□□□□□ -0.91
CIITA-201ENST00000324288 LETM1O95202 739 aaPredicted RBP9.34□□□□□ -0.91
CIITA-201ENST00000324288 ME1P48163 572 aa9.34□□□□□ -0.91
CIITA-201ENST00000324288 BAZ1AQ9NRL2 1556 aaPredicted RBP9.34□□□□□ -0.91
CIITA-201ENST00000324288 SART3Q15020 963 aaKnown RBP9.34□□□□□ -0.91
CIITA-201ENST00000324288 PDCL3Q9H2J4 239 aa9.34□□□□□ -0.91
CIITA-201ENST00000324288 SSBP05455 408 aaKnown RBP eCLIP9.34□□□□□ -0.91
CIITA-201ENST00000324288 RABEP1Q15276 862 aa9.34□□□□□ -0.91
CIITA-201ENST00000324288 SKAP1Q86WV1 359 aa9.34□□□□□ -0.91
CIITA-201ENST00000324288 MATR3P43243 847 aaKnown RBP eCLIP9.34□□□□□ -0.91
CIITA-201ENST00000324288 RUNDC1Q96C34 613 aa9.34□□□□□ -0.91
CIITA-201ENST00000324288 USP8P40818 1118 aa9.34□□□□□ -0.91
CIITA-201ENST00000324288 CCDC181Q5TID7 509 aa9.34□□□□□ -0.91
CIITA-201ENST00000324288 ZNF396Q96N95 335 aaPredicted RBP9.34□□□□□ -0.91
CIITA-201ENST00000324288 TTC39AQ5SRH9 613 aa9.34□□□□□ -0.91
CIITA-201ENST00000324288 RAPGEF4Q8WZA2 1011 aa9.34□□□□□ -0.91
CIITA-201ENST00000324288 KIAA1328Q86T90 577 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms