RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 EVC2Q86UK5 1308 aa22.84■■□□□ 1.25
HDDC2-201ENST00000318787 RBM6P78332 1123 aaKnown RBP22.82■■□□□ 1.24
HDDC2-201ENST00000318787 NUTM2GQ5VZR2 741 aa22.82■■□□□ 1.24
HDDC2-201ENST00000318787 FNBP4Q8N3X1 1017 aaPredicted RBP22.82■■□□□ 1.24
HDDC2-201ENST00000318787 TRPC5Q9UL62 973 aaPredicted RBP22.82■■□□□ 1.24
HDDC2-201ENST00000318787 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.81■■□□□ 1.24
HDDC2-201ENST00000318787 CRYBG1Q9Y4K1 1723 aa22.8■■□□□ 1.24
HDDC2-201ENST00000318787 POLR3AO14802 1390 aaPredicted RBP22.79■■□□□ 1.24
HDDC2-201ENST00000318787 BCL9LQ86UU0 1499 aa22.79■■□□□ 1.24
HDDC2-201ENST00000318787 PHRF1Q9P1Y6 1649 aaKnown RBP22.79■■□□□ 1.24
HDDC2-201ENST00000318787 PLEKHG3A1L390 1219 aa22.78■■□□□ 1.24
HDDC2-201ENST00000318787 CABP1Q9NZU7 370 aa22.78■■□□□ 1.24
HDDC2-201ENST00000318787 RGS12O14924 1447 aa22.78■■□□□ 1.24
HDDC2-201ENST00000318787 NWD2Q9ULI1 1742 aa22.78■■□□□ 1.24
HDDC2-201ENST00000318787 ATRNO75882 1429 aa22.77■■□□□ 1.24
HDDC2-201ENST00000318787 CDK12Q9NYV4 1490 aaPredicted RBP22.77■■□□□ 1.24
HDDC2-201ENST00000318787 CCDC9Q9Y3X0 531 aaKnown RBP22.76■■□□□ 1.23
HDDC2-201ENST00000318787 SLIT2O94813 1529 aa22.75■■□□□ 1.23
HDDC2-201ENST00000318787 UNC5CLQ8IV45 518 aa22.75■■□□□ 1.23
HDDC2-201ENST00000318787 ABTB2Q8N961 1025 aa22.75■■□□□ 1.23
HDDC2-201ENST00000318787 COL14A1Q05707 1796 aaKnown RBP22.74■■□□□ 1.23
HDDC2-201ENST00000318787 CCER1Q8TC90 406 aaPredicted RBP22.74■■□□□ 1.23
HDDC2-201ENST00000318787 AKAP12Q02952 1782 aa22.73■■□□□ 1.23
HDDC2-201ENST00000318787 UPF1Q92900 1129 aaKnown RBP eCLIP22.73■■□□□ 1.23
HDDC2-201ENST00000318787 FAM83GA6ND36 823 aa22.72■■□□□ 1.23
HDDC2-201ENST00000318787 PRDM11Q9NQV5 511 aa22.71■■□□□ 1.23
HDDC2-201ENST00000318787 NRAPQ86VF7 1730 aa22.71■■□□□ 1.23
HDDC2-201ENST00000318787 GJD4Q96KN9 370 aaPredicted RBP22.7■■□□□ 1.22
HDDC2-201ENST00000318787 GLI3P10071 1580 aa22.69■■□□□ 1.22
HDDC2-201ENST00000318787 USP6P35125 1406 aa22.69■■□□□ 1.22
HDDC2-201ENST00000318787 ATAD2Q6PL18 1390 aa22.69■■□□□ 1.22
HDDC2-201ENST00000318787 ZC3H6P61129 1189 aaKnown RBP22.69■■□□□ 1.22
HDDC2-201ENST00000318787 BTG4Q9NY30 223 aa22.69■■□□□ 1.22
HDDC2-201ENST00000318787 NRKQ7Z2Y5 1582 aa22.68■■□□□ 1.22
HDDC2-201ENST00000318787 SBNO2Q9Y2G9 1366 aa22.67■■□□□ 1.22
HDDC2-201ENST00000318787 CHRNA2Q15822 529 aa22.67■■□□□ 1.22
HDDC2-201ENST00000318787 TMC1Q8TDI8 760 aa22.67■■□□□ 1.22
HDDC2-201ENST00000318787 KIAA0232Q92628 1395 aa22.67■■□□□ 1.22
HDDC2-201ENST00000318787 CLSPNQ9HAW4 1339 aa22.66■■□□□ 1.22
HDDC2-201ENST00000318787 ZBTB7CA1YPR0 619 aa22.66■■□□□ 1.22
HDDC2-201ENST00000318787 PIK3C2AO00443 1686 aa22.66■■□□□ 1.22
HDDC2-201ENST00000318787 ST20-MTHFSA0A0A6YYL1 179 aa22.65■■□□□ 1.22
HDDC2-201ENST00000318787 A0A0G2JS52 829 aa22.65■■□□□ 1.22
HDDC2-201ENST00000318787 MYT1Q01538 1121 aa22.65■■□□□ 1.22
HDDC2-201ENST00000318787 NLRP13Q86W25 1043 aa22.65■■□□□ 1.22
HDDC2-201ENST00000318787 BRWD3Q6RI45 1802 aa22.65■■□□□ 1.22
HDDC2-201ENST00000318787 MON2Q7Z3U7 1717 aa22.64■■□□□ 1.22
HDDC2-201ENST00000318787 NLRP6P59044 892 aa22.63■■□□□ 1.21
HDDC2-201ENST00000318787 VPS72Q15906 364 aa22.63■■□□□ 1.21
HDDC2-201ENST00000318787 KTN1Q86UP2 1357 aaKnown RBP22.63■■□□□ 1.21
HDDC2-201ENST00000318787 USP47Q96K76 1375 aa22.62■■□□□ 1.21
HDDC2-201ENST00000318787 STRN4Q9NRL3 753 aa22.62■■□□□ 1.21
HDDC2-201ENST00000318787 BRD4O60885 1362 aaPredicted RBP22.61■■□□□ 1.21
HDDC2-201ENST00000318787 ZNF692Q9BU19 519 aaPredicted RBP22.61■■□□□ 1.21
HDDC2-201ENST00000318787 SOX12O15370 315 aa22.6■■□□□ 1.21
HDDC2-201ENST00000318787 USP19O94966 1318 aa22.59■■□□□ 1.21
HDDC2-201ENST00000318787 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.59■■□□□ 1.21
HDDC2-201ENST00000318787 TIMELESSQ9UNS1 1208 aa22.59■■□□□ 1.21
HDDC2-201ENST00000318787 TTC21BQ7Z4L5 1316 aa22.58■■□□□ 1.21
HDDC2-201ENST00000318787 GCP02774 474 aa22.58■■□□□ 1.21
HDDC2-201ENST00000318787 EVA1CP58658 441 aa22.57■■□□□ 1.2
HDDC2-201ENST00000318787 HDGFL2Q7Z4V5 671 aaPredicted RBP22.57■■□□□ 1.2
HDDC2-201ENST00000318787 SLC12A5Q9H2X9 1139 aa22.57■■□□□ 1.2
HDDC2-201ENST00000318787 CPSF1Q10570 1443 aaKnown RBP22.57■■□□□ 1.2
HDDC2-201ENST00000318787 FAM98CQ17RN3 349 aaKnown RBP22.56■■□□□ 1.2
HDDC2-201ENST00000318787 SEPT12Q8IYM1 358 aa22.56■■□□□ 1.2
HDDC2-201ENST00000318787 TESK2Q96S53 571 aa22.56■■□□□ 1.2
HDDC2-201ENST00000318787 SSH2Q76I76 1423 aa22.56■■□□□ 1.2
HDDC2-201ENST00000318787 SLIT3O75094 1523 aa22.54■■□□□ 1.2
HDDC2-201ENST00000318787 USP35Q9P2H5 1018 aa22.54■■□□□ 1.2
HDDC2-201ENST00000318787 TTC21AQ8NDW8 1320 aa22.54■■□□□ 1.2
HDDC2-201ENST00000318787 LMO7Q8WWI1 1683 aa22.54■■□□□ 1.2
HDDC2-201ENST00000318787 TMF1P82094 1093 aa22.53■■□□□ 1.2
HDDC2-201ENST00000318787 CD163L1Q9NR16 1453 aa22.53■■□□□ 1.2
HDDC2-201ENST00000318787 RGPD5Q99666 1765 aa22.53■■□□□ 1.2
HDDC2-201ENST00000318787 TERF2IPQ9NYB0 399 aa22.52■■□□□ 1.2
HDDC2-201ENST00000318787 CAMTA1Q9Y6Y1 1673 aa22.52■■□□□ 1.2
HDDC2-201ENST00000318787 SPATA31A5Q5VU36 1347 aa22.51■■□□□ 1.19
HDDC2-201ENST00000318787 SPATA31A7Q8IWB4 1347 aa22.51■■□□□ 1.19
HDDC2-201ENST00000318787 A0A1W2PP64 1363 aa22.51■■□□□ 1.19
HDDC2-201ENST00000318787 CPDO75976 1380 aa22.51■■□□□ 1.19
HDDC2-201ENST00000318787 SLC24A1O60721 1099 aa22.5■■□□□ 1.19
HDDC2-201ENST00000318787 NME9Q86XW9 330 aa22.5■■□□□ 1.19
HDDC2-201ENST00000318787 ZRANB1Q9UGI0 708 aa22.5■■□□□ 1.19
HDDC2-201ENST00000318787 EP400Q96L91 3159 aa22.48■■□□□ 1.19
HDDC2-201ENST00000318787 LTN1O94822 1766 aa22.48■■□□□ 1.19
HDDC2-201ENST00000318787 EDC4Q6P2E9 1401 aaKnown RBP22.48■■□□□ 1.19
HDDC2-201ENST00000318787 LARP1Q6PKG0 1096 aaKnown RBP22.47■■□□□ 1.19
HDDC2-201ENST00000318787 KRT27Q7Z3Y8 459 aa22.47■■□□□ 1.19
HDDC2-201ENST00000318787 KCNH5Q8NCM2 988 aa22.47■■□□□ 1.19
HDDC2-201ENST00000318787 PUS7Q96PZ0 661 aaKnown RBP22.47■■□□□ 1.19
HDDC2-201ENST00000318787 SPATA31A1Q5TZJ5 1347 aa22.47■■□□□ 1.19
HDDC2-201ENST00000318787 COL5A2P05997 1499 aaPredicted RBP22.46■■□□□ 1.19
HDDC2-201ENST00000318787 NINLQ9Y2I6 1382 aa22.46■■□□□ 1.19
HDDC2-201ENST00000318787 THSD7AQ9UPZ6 1657 aa22.45■■□□□ 1.18
HDDC2-201ENST00000318787 POLR3GLQ9BT43 218 aa22.45■■□□□ 1.18
HDDC2-201ENST00000318787 COL18A1P39060 1754 aa22.45■■□□□ 1.18
HDDC2-201ENST00000318787 USP54Q70EL1 1684 aa22.45■■□□□ 1.18
HDDC2-201ENST00000318787 ONECUT3O60422 494 aaPredicted RBP22.44■■□□□ 1.18
HDDC2-201ENST00000318787 NFAT5O94916 1531 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms