RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 SSH1Q8WYL5 1049 aa24.18■■□□□ 1.46
RTN4-201ENST00000317610 CABP2Q9NPB3 220 aa24.17■■□□□ 1.46
RTN4-201ENST00000317610 GGT6Q6P531 493 aa24.17■■□□□ 1.46
RTN4-201ENST00000317610 ZFYVE9O95405 1425 aa24.17■■□□□ 1.46
RTN4-201ENST00000317610 MCM4P33991 863 aa24.16■■□□□ 1.46
RTN4-201ENST00000317610 CLTCQ00610 1675 aaKnown RBP24.15■■□□□ 1.46
RTN4-201ENST00000317610 CHMP5Q9NZZ3 219 aa24.15■■□□□ 1.46
RTN4-201ENST00000317610 ITPRIPQ8IWB1 547 aa24.13■■□□□ 1.45
RTN4-201ENST00000317610 FSD2A1L4K1 749 aa24.13■■□□□ 1.45
RTN4-201ENST00000317610 ZBTB40Q9NUA8 1239 aa24.13■■□□□ 1.45
RTN4-201ENST00000317610 MFAP1P55081 439 aaKnown RBP24.12■■□□□ 1.45
RTN4-201ENST00000317610 NOB1Q9ULX3 412 aaKnown RBP24.12■■□□□ 1.45
RTN4-201ENST00000317610 U2SURPO15042 1029 aaKnown RBP24.11■■□□□ 1.45
RTN4-201ENST00000317610 PRKCSHP14314 528 aaPredicted RBP24.11■■□□□ 1.45
RTN4-201ENST00000317610 ARHGAP31Q2M1Z3 1444 aa24.11■■□□□ 1.45
RTN4-201ENST00000317610 NCOA3Q9Y6Q9 1424 aa24.11■■□□□ 1.45
RTN4-201ENST00000317610 KIF16BQ96L93 1317 aa24.11■■□□□ 1.45
RTN4-201ENST00000317610 CD163L1Q9NR16 1453 aa24.1■■□□□ 1.45
RTN4-201ENST00000317610 ATAD2Q6PL18 1390 aa24.1■■□□□ 1.45
RTN4-201ENST00000317610 CDC42BPGQ6DT37 1551 aa24.1■■□□□ 1.45
RTN4-201ENST00000317610 PNPLA6Q8IY17 1366 aa24.1■■□□□ 1.45
RTN4-201ENST00000317610 TMEM57Q8N5G2 664 aa24.1■■□□□ 1.45
RTN4-201ENST00000317610 RSPH6AQ9H0K4 717 aa24.1■■□□□ 1.45
RTN4-201ENST00000317610 PTPRMP28827 1452 aa24.09■■□□□ 1.45
RTN4-201ENST00000317610 GGNBP2Q9H3C7 697 aa24.09■■□□□ 1.45
RTN4-201ENST00000317610 ZNF692Q9BU19 519 aaPredicted RBP24.08■■□□□ 1.45
RTN4-201ENST00000317610 FYB1O15117 783 aa24.07■■□□□ 1.44
RTN4-201ENST00000317610 IPO8O15397 1037 aaKnown RBP24.07■■□□□ 1.44
RTN4-201ENST00000317610 ALDH1L2Q3SY69 923 aa24.07■■□□□ 1.44
RTN4-201ENST00000317610 RBM25P49756 843 aaKnown RBP24.07■■□□□ 1.44
RTN4-201ENST00000317610 NUCB1Q02818 461 aa24.07■■□□□ 1.44
RTN4-201ENST00000317610 NUTM2DQ5VT03 806 aaPredicted RBP24.07■■□□□ 1.44
RTN4-201ENST00000317610 GOLGA6L3A6NEY3 463 aa24.06■■□□□ 1.44
RTN4-201ENST00000317610 RIPK4P57078 832 aa24.06■■□□□ 1.44
RTN4-201ENST00000317610 SPRYD3Q8NCJ5 442 aa24.06■■□□□ 1.44
RTN4-201ENST00000317610 PNNQ9H307 717 aaKnown RBP24.06■■□□□ 1.44
RTN4-201ENST00000317610 XRCC6P12956 609 aaKnown RBP eCLIP24.05■■□□□ 1.44
RTN4-201ENST00000317610 DDIT3P35638 169 aa24.05■■□□□ 1.44
RTN4-201ENST00000317610 BRPF1P55201 1214 aaPredicted RBP24.05■■□□□ 1.44
RTN4-201ENST00000317610 HSCBQ8IWL3 235 aa24.05■■□□□ 1.44
RTN4-201ENST00000317610 TERF2IPQ9NYB0 399 aa24.05■■□□□ 1.44
RTN4-201ENST00000317610 KIF20BQ96Q89 1820 aa24.05■■□□□ 1.44
RTN4-201ENST00000317610 SNX21Q969T3 373 aa24.05■■□□□ 1.44
RTN4-201ENST00000317610 PPIP5K1Q6PFW1 1433 aa24.04■■□□□ 1.44
RTN4-201ENST00000317610 SRPK2P78362 688 aaKnown RBP24.04■■□□□ 1.44
RTN4-201ENST00000317610 RRAGDQ9NQL2 400 aaPredicted RBP24.04■■□□□ 1.44
RTN4-201ENST00000317610 DIAPH1O60610 1272 aaKnown RBP24.03■■□□□ 1.44
RTN4-201ENST00000317610 MYO5BQ9ULV0 1848 aa24.03■■□□□ 1.44
RTN4-201ENST00000317610 DIP2CQ9Y2E4 1556 aa24.03■■□□□ 1.44
RTN4-201ENST00000317610 TRAK2O60296 914 aa24.02■■□□□ 1.44
RTN4-201ENST00000317610 SAFB2Q14151 953 aaKnown RBP eCLIP24.02■■□□□ 1.448e-8■■■□□ 19.2
RTN4-201ENST00000317610 LRRC7Q96NW7 1537 aa24.02■■□□□ 1.44
RTN4-201ENST00000317610 ZNF428Q96B54 188 aa24.02■■□□□ 1.44
RTN4-201ENST00000317610 IDI1Q13907 227 aa24.01■■□□□ 1.43
RTN4-201ENST00000317610 TMEM131LA2VDJ0 1609 aa24■■□□□ 1.43
RTN4-201ENST00000317610 DDX11L8A8MPP1 907 aa24■■□□□ 1.43
RTN4-201ENST00000317610 FAM135BQ49AJ0 1406 aa23.99■■□□□ 1.43
RTN4-201ENST00000317610 CHD1LQ86WJ1 897 aa23.99■■□□□ 1.43
RTN4-201ENST00000317610 SLC52A1Q9NWF4 448 aa23.99■■□□□ 1.43
RTN4-201ENST00000317610 FCHSD2O94868 740 aa23.99■■□□□ 1.43
RTN4-201ENST00000317610 NEO1Q92859 1461 aa23.98■■□□□ 1.43
RTN4-201ENST00000317610 PIK3R4Q99570 1358 aa23.98■■□□□ 1.43
RTN4-201ENST00000317610 YTHDC2Q9H6S0 1430 aaKnown RBP23.98■■□□□ 1.43
RTN4-201ENST00000317610 BMP2KLQ5H9B9 411 aa23.98■■□□□ 1.43
RTN4-201ENST00000317610 STK26Q9P289 416 aa23.98■■□□□ 1.43
RTN4-201ENST00000317610 CIZ1Q9ULV3 898 aaPredicted RBP23.96■■□□□ 1.43
RTN4-201ENST00000317610 ARHGEF40Q8TER5 1519 aa23.96■■□□□ 1.43
RTN4-201ENST00000317610 PTCH1Q13635 1447 aa23.96■■□□□ 1.43
RTN4-201ENST00000317610 LNPKQ9C0E8 428 aa23.96■■□□□ 1.43
RTN4-201ENST00000317610 PREX1Q8TCU6 1659 aa23.96■■□□□ 1.43
RTN4-201ENST00000317610 NPM1P06748 294 aaKnown RBP eCLIP23.95■■□□□ 1.43
RTN4-201ENST00000317610 ISY1Q9ULR0 285 aaKnown RBP23.95■■□□□ 1.43
RTN4-201ENST00000317610 HDGFL2Q7Z4V5 671 aaPredicted RBP23.95■■□□□ 1.42
RTN4-201ENST00000317610 GZF1Q9H116 711 aaPredicted RBP23.95■■□□□ 1.42
RTN4-201ENST00000317610 MINK1Q8N4C8 1332 aaPredicted RBP23.95■■□□□ 1.42
RTN4-201ENST00000317610 MRE11P49959 708 aa23.94■■□□□ 1.42
RTN4-201ENST00000317610 ARHGAP45Q92619 1136 aa23.94■■□□□ 1.42
RTN4-201ENST00000317610 PRAM1Q96QH2 718 aa23.94■■□□□ 1.42
RTN4-201ENST00000317610 GCC1Q96CN9 775 aa23.94■■□□□ 1.42
RTN4-201ENST00000317610 CHMP4BQ9H444 224 aaKnown RBP23.94■■□□□ 1.42
RTN4-201ENST00000317610 REREQ9P2R6 1566 aa23.94■■□□□ 1.42
RTN4-201ENST00000317610 ZBTB7BO15156 539 aaPredicted RBP23.93■■□□□ 1.42
RTN4-201ENST00000317610 PANK2Q9BZ23 570 aa23.92■■□□□ 1.42
RTN4-201ENST00000317610 KIF2CQ99661 725 aa23.91■■□□□ 1.42
RTN4-201ENST00000317610 MRPL50Q8N5N7 158 aaKnown RBP23.9■■□□□ 1.42
RTN4-201ENST00000317610 ALKQ9UM73 1620 aa23.9■■□□□ 1.42
RTN4-201ENST00000317610 RICTORQ6R327 1708 aa23.9■■□□□ 1.42
RTN4-201ENST00000317610 EIF5BO60841 1220 aaKnown RBP23.89■■□□□ 1.42
RTN4-201ENST00000317610 VAMP4O75379 141 aa23.89■■□□□ 1.42
RTN4-201ENST00000317610 PRKAR2BP31323 418 aa23.89■■□□□ 1.42
RTN4-201ENST00000317610 RAB3GAP1Q15042 981 aa23.89■■□□□ 1.41
RTN4-201ENST00000317610 NFE2L2Q16236 605 aa23.88■■□□□ 1.41
RTN4-201ENST00000317610 TNPO1Q92973 898 aaKnown RBP23.88■■□□□ 1.41
RTN4-201ENST00000317610 CDK19Q9BWU1 502 aa23.88■■□□□ 1.41
RTN4-201ENST00000317610 ATP7BP35670 1465 aa23.88■■□□□ 1.41
RTN4-201ENST00000317610 RAPGEF3O95398 923 aa23.87■■□□□ 1.41
RTN4-201ENST00000317610 CLCN1P35523 988 aa23.87■■□□□ 1.41
RTN4-201ENST00000317610 CALD1Q05682 793 aaKnown RBP23.87■■□□□ 1.41
RTN4-201ENST00000317610 POLKQ9UBT6 870 aa23.87■■□□□ 1.41
RTN4-201ENST00000317610 ABCC4O15439 1325 aa23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms