RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 CLASRPQ8N2M8 674 aaKnown RBP15.4■□□□□ 0.06
COL3A1-201ENST00000304636 SAFBQ15424 915 aaKnown RBP eCLIP15.39■□□□□ 0.05
COL3A1-201ENST00000304636 HIP1O00291 1037 aa15.39■□□□□ 0.05
COL3A1-201ENST00000304636 AEBP1Q8IUX7 1158 aa15.39■□□□□ 0.05
COL3A1-201ENST00000304636 APPP05067 770 aa15.39■□□□□ 0.05
COL3A1-201ENST00000304636 RUFY1Q96T51 708 aa15.39■□□□□ 0.05
COL3A1-201ENST00000304636 FOSBP53539 338 aa15.39■□□□□ 0.05
COL3A1-201ENST00000304636 ERCC4Q92889 916 aaPredicted RBP15.39■□□□□ 0.05
COL3A1-201ENST00000304636 CCDC30Q5VVM6 783 aa15.38■□□□□ 0.05
COL3A1-201ENST00000304636 NFXL1Q6ZNB6 911 aa15.38■□□□□ 0.05
COL3A1-201ENST00000304636 DAPK1P53355 1430 aa15.38■□□□□ 0.05
COL3A1-201ENST00000304636 NCAPD3P42695 1498 aa15.38■□□□□ 0.05
COL3A1-201ENST00000304636 SURF6O75683 361 aaKnown RBP15.38■□□□□ 0.05
COL3A1-201ENST00000304636 GNAI2P04899 355 aa15.38■□□□□ 0.05
COL3A1-201ENST00000304636 SPC24Q8NBT2 197 aa15.38■□□□□ 0.05
COL3A1-201ENST00000304636 C9orf84Q5VXU9 1444 aa15.38■□□□□ 0.05
COL3A1-201ENST00000304636 PDE4CQ08493 712 aa15.38■□□□□ 0.05
COL3A1-201ENST00000304636 TMEM132EQ6IEE7 984 aa15.38■□□□□ 0.05
COL3A1-201ENST00000304636 SUPT6HQ7KZ85 1726 aaKnown RBP15.37■□□□□ 0.05
COL3A1-201ENST00000304636 CCDC112Q8NEF3 446 aa15.37■□□□□ 0.05
COL3A1-201ENST00000304636 RALYLQ86SE5 291 aaKnown RBP15.37■□□□□ 0.05
COL3A1-201ENST00000304636 FSD1Q9BTV5 496 aa15.37■□□□□ 0.05
COL3A1-201ENST00000304636 BCL11BQ9C0K0 894 aaPredicted RBP15.37■□□□□ 0.05
COL3A1-201ENST00000304636 WWC1Q8IX03 1113 aa15.36■□□□□ 0.05
COL3A1-201ENST00000304636 PDILTQ8N807 584 aa15.36■□□□□ 0.05
COL3A1-201ENST00000304636 ZNF428Q96B54 188 aa15.36■□□□□ 0.05
COL3A1-201ENST00000304636 SMC2O95347 1197 aa15.36■□□□□ 0.05
COL3A1-201ENST00000304636 ERICH2A1L162 156 aa15.35■□□□□ 0.05
COL3A1-201ENST00000304636 ZNF396Q96N95 335 aaPredicted RBP15.35■□□□□ 0.05
COL3A1-201ENST00000304636 C11orf95C9JLR9 678 aaPredicted RBP15.35■□□□□ 0.05
COL3A1-201ENST00000304636 CDR1P51861 262 aa15.35■□□□□ 0.05
COL3A1-201ENST00000304636 CCT4P50991 539 aaKnown RBP15.34■□□□□ 0.05
COL3A1-201ENST00000304636 LRRCC1Q9C099 1032 aa15.34■□□□□ 0.05
COL3A1-201ENST00000304636 TNMDQ9H2S6 317 aa15.34■□□□□ 0.05
COL3A1-201ENST00000304636 CYP46A1Q9Y6A2 500 aa15.34■□□□□ 0.05
COL3A1-201ENST00000304636 NCOA1Q15788 1441 aa15.34■□□□□ 0.05
COL3A1-201ENST00000304636 HECW1Q76N89 1606 aa15.34■□□□□ 0.05
COL3A1-201ENST00000304636 C20orf194Q5TEA3 1177 aa15.34■□□□□ 0.05
COL3A1-201ENST00000304636 ARHGAP5Q13017 1502 aa15.34■□□□□ 0.05
COL3A1-201ENST00000304636 KRT85P78386 507 aa15.33■□□□□ 0.05
COL3A1-201ENST00000304636 ANKRD1Q15327 319 aa15.33■□□□□ 0.05
COL3A1-201ENST00000304636 ERC1Q8IUD2 1116 aa15.33■□□□□ 0.05
COL3A1-201ENST00000304636 SRCIN1Q9C0H9 1055 aa15.33■□□□□ 0.05
COL3A1-201ENST00000304636 SLC12A5Q9H2X9 1139 aa15.33■□□□□ 0.05
COL3A1-201ENST00000304636 GAS2L2Q8NHY3 880 aa15.33■□□□□ 0.04
COL3A1-201ENST00000304636 NKTRP30414 1462 aaKnown RBP15.33■□□□□ 0.04
COL3A1-201ENST00000304636 TMX4Q9H1E5 349 aaPredicted RBP15.33■□□□□ 0.04
COL3A1-201ENST00000304636 RIC3Q7Z5B4 369 aa15.32■□□□□ 0.04
COL3A1-201ENST00000304636 GTF2E1P29083 439 aaPredicted RBP15.32■□□□□ 0.04
COL3A1-201ENST00000304636 MAP3K1Q13233 1512 aa15.32■□□□□ 0.04
COL3A1-201ENST00000304636 VPS53Q5VIR6 699 aa15.31■□□□□ 0.04
COL3A1-201ENST00000304636 TBC1D2Q9BYX2 928 aa15.31■□□□□ 0.04
COL3A1-201ENST00000304636 NEUROD6Q96NK8 337 aa15.31■□□□□ 0.04
COL3A1-201ENST00000304636 ANKRD30BQ9BXX2 1392 aa15.31■□□□□ 0.04
COL3A1-201ENST00000304636 SLC4A2P04920 1241 aa15.31■□□□□ 0.04
COL3A1-201ENST00000304636 PDIA4P13667 645 aaKnown RBP15.31■□□□□ 0.04
COL3A1-201ENST00000304636 LEKR1Q6ZMV7 388 aa15.31■□□□□ 0.04
COL3A1-201ENST00000304636 DHX16O60231 1041 aaKnown RBP15.3■□□□□ 0.04
COL3A1-201ENST00000304636 RPAP2Q8IXW5 612 aaPredicted RBP15.3■□□□□ 0.04
COL3A1-201ENST00000304636 AMOTL1Q8IY63 956 aa15.3■□□□□ 0.04
COL3A1-201ENST00000304636 WASHC4Q2M389 1173 aa15.3■□□□□ 0.04
COL3A1-201ENST00000304636 TROQ12816 1431 aaPredicted RBP15.3■□□□□ 0.04
COL3A1-201ENST00000304636 SKAP1Q86WV1 359 aa15.3■□□□□ 0.04
COL3A1-201ENST00000304636 LRPPRCP42704 1394 aaKnown RBP15.3■□□□□ 0.04
COL3A1-201ENST00000304636 SYCE3A1L190 88 aa15.3■□□□□ 0.04
COL3A1-201ENST00000304636 MPNDQ8N594 471 aa15.3■□□□□ 0.04
COL3A1-201ENST00000304636 ZSCAN31Q96LW9 406 aaPredicted RBP15.3■□□□□ 0.04
COL3A1-201ENST00000304636 FMNL2Q96PY5 1086 aa15.29■□□□□ 0.04
COL3A1-201ENST00000304636 PDCL2Q8N4E4 241 aa15.29■□□□□ 0.04
COL3A1-201ENST00000304636 TMEM57Q8N5G2 664 aa15.29■□□□□ 0.04
COL3A1-201ENST00000304636 RARSP54136 660 aaKnown RBP15.29■□□□□ 0.04
COL3A1-201ENST00000304636 STK38Q15208 465 aa15.29■□□□□ 0.04
COL3A1-201ENST00000304636 SMARCE1Q969G3 411 aa15.29■□□□□ 0.04
COL3A1-201ENST00000304636 PDCL3Q9H2J4 239 aa15.29■□□□□ 0.04
COL3A1-201ENST00000304636 AQRO60306 1485 aaKnown RBP eCLIP15.29■□□□□ 0.04
COL3A1-201ENST00000304636 LARP1BQ659C4 914 aaKnown RBP15.29■□□□□ 0.04
COL3A1-201ENST00000304636 CAGE1Q8TC20 777 aa15.28■□□□□ 0.04
COL3A1-201ENST00000304636 XBP1P17861 261 aa15.28■□□□□ 0.04
COL3A1-201ENST00000304636 FILIP1LQ4L180 1135 aa15.28■□□□□ 0.04
COL3A1-201ENST00000304636 NAP1L1P55209 391 aaKnown RBP15.28■□□□□ 0.04
COL3A1-201ENST00000304636 BRMS1Q9HCU9 246 aa15.28■□□□□ 0.04
COL3A1-201ENST00000304636 NUP62CLQ9H1M0 184 aa15.27■□□□□ 0.04
COL3A1-201ENST00000304636 SYNJ2O15056 1496 aa15.27■□□□□ 0.04
COL3A1-201ENST00000304636 TAF3Q5VWG9 929 aa15.27■□□□□ 0.04
COL3A1-201ENST00000304636 GRIN2BQ13224 1484 aa15.27■□□□□ 0.04
COL3A1-201ENST00000304636 POLA1P09884 1462 aaPredicted RBP15.27■□□□□ 0.03
COL3A1-201ENST00000304636 AIMP1Q12904 312 aaKnown RBP15.27■□□□□ 0.03
COL3A1-201ENST00000304636 TNPO1Q92973 898 aaKnown RBP15.27■□□□□ 0.03
COL3A1-201ENST00000304636 PATL2C9JE40 543 aaKnown RBP15.27■□□□□ 0.03
COL3A1-201ENST00000304636 H0YHG0 523 aa15.26■□□□□ 0.03
COL3A1-201ENST00000304636 JMYQ8N9B5 988 aa15.26■□□□□ 0.03
COL3A1-201ENST00000304636 FCHSD2O94868 740 aa15.26■□□□□ 0.03
COL3A1-201ENST00000304636 CEBPZQ03701 1054 aaKnown RBP15.26■□□□□ 0.03
COL3A1-201ENST00000304636 SERPINC1P01008 464 aa15.26■□□□□ 0.03
COL3A1-201ENST00000304636 SPATA32Q96LK8 384 aa15.26■□□□□ 0.03
COL3A1-201ENST00000304636 NOL10Q9BSC4 688 aaKnown RBP15.25■□□□□ 0.03
COL3A1-201ENST00000304636 PRM3Q9NNZ6 103 aa15.25■□□□□ 0.03
COL3A1-201ENST00000304636 PPP6R1Q9UPN7 881 aa15.25■□□□□ 0.03
COL3A1-201ENST00000304636 PDRG1Q9NUG6 133 aa15.25■□□□□ 0.03
COL3A1-201ENST00000304636 PRG4Q92954 1404 aaPredicted RBP15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms