RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 CCDC43Q96MW1 224 aaKnown RBP9.12□□□□□ -0.95
SF3B3-201ENST00000302516 VPS37DQ86XT2 251 aa9.12□□□□□ -0.95
SF3B3-201ENST00000302516 SDF4Q9BRK5 362 aa9.12□□□□□ -0.95
SF3B3-201ENST00000302516 WDR97A6NE52 1622 aa9.12□□□□□ -0.95
SF3B3-201ENST00000302516 KIAA0754O94854 1291 aa9.12□□□□□ -0.95
SF3B3-201ENST00000302516 UBTFL1P0CB47 393 aaPredicted RBP9.12□□□□□ -0.95
SF3B3-201ENST00000302516 ODF2Q5BJF6 829 aa9.12□□□□□ -0.95
SF3B3-201ENST00000302516 PKNOX2Q96KN3 472 aa9.12□□□□□ -0.95
SF3B3-201ENST00000302516 DAPK1P53355 1430 aa9.12□□□□□ -0.95
SF3B3-201ENST00000302516 MAGEC2Q9UBF1 373 aaPredicted RBP9.12□□□□□ -0.95
SF3B3-201ENST00000302516 SRCIN1Q9C0H9 1055 aa9.11□□□□□ -0.95
SF3B3-201ENST00000302516 SYNJ2O15056 1496 aa9.11□□□□□ -0.95
SF3B3-201ENST00000302516 SMC2O95347 1197 aa9.11□□□□□ -0.95
SF3B3-201ENST00000302516 KIF14Q15058 1648 aa9.11□□□□□ -0.95
SF3B3-201ENST00000302516 ZNHIT6Q9NWK9 470 aaKnown RBP9.11□□□□□ -0.95
SF3B3-201ENST00000302516 LNPKQ9C0E8 428 aa9.1□□□□□ -0.95
SF3B3-201ENST00000302516 CC2D2AQ9P2K1 1620 aa9.1□□□□□ -0.95
SF3B3-201ENST00000302516 PDILTQ8N807 584 aa9.1□□□□□ -0.95
SF3B3-201ENST00000302516 KIAA1107Q9UPP5 1409 aa9.1□□□□□ -0.95
SF3B3-201ENST00000302516 INCENPQ9NQS7 918 aa9.1□□□□□ -0.95
SF3B3-201ENST00000302516 CTDP1Q9Y5B0 961 aaPredicted RBP9.1□□□□□ -0.95
SF3B3-201ENST00000302516 FAM135AQ9P2D6 1515 aa9.1□□□□□ -0.95
SF3B3-201ENST00000302516 SLC3A2P08195 630 aaKnown RBP9.1□□□□□ -0.95
SF3B3-201ENST00000302516 OFD1O75665 1012 aa9.1□□□□□ -0.95
SF3B3-201ENST00000302516 CCDC112Q8NEF3 446 aa9.1□□□□□ -0.95
SF3B3-201ENST00000302516 GRPEL1Q9HAV7 217 aa9.1□□□□□ -0.95
SF3B3-201ENST00000302516 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.1□□□□□ -0.952e-23■□□□□ 10
SF3B3-201ENST00000302516 STIM1Q13586 685 aa9.1□□□□□ -0.95
SF3B3-201ENST00000302516 IL27Q8NEV9 243 aa9.1□□□□□ -0.95
SF3B3-201ENST00000302516 TSPYL4Q9UJ04 414 aa9.1□□□□□ -0.95
SF3B3-201ENST00000302516 K7ELQ4 463 aaPredicted RBP9.09□□□□□ -0.95
SF3B3-201ENST00000302516 ARAP1Q96P48 1450 aa9.09□□□□□ -0.95
SF3B3-201ENST00000302516 CCDC30Q5VVM6 783 aa9.09□□□□□ -0.95
SF3B3-201ENST00000302516 PANK1Q8TE04 598 aa9.09□□□□□ -0.95
SF3B3-201ENST00000302516 HSP90AB2PQ58FF8 381 aa9.09□□□□□ -0.95
SF3B3-201ENST00000302516 ANKRD18AQ8IVF6 992 aa9.09□□□□□ -0.95
SF3B3-201ENST00000302516 LTV1Q96GA3 475 aaPredicted RBP9.09□□□□□ -0.95
SF3B3-201ENST00000302516 ZNF428Q96B54 188 aa9.09□□□□□ -0.95
SF3B3-201ENST00000302516 BACH2Q9BYV9 841 aa9.09□□□□□ -0.95
SF3B3-201ENST00000302516 C9orf84Q5VXU9 1444 aa9.09□□□□□ -0.96
SF3B3-201ENST00000302516 AKNAQ7Z591 1439 aa9.08□□□□□ -0.96
SF3B3-201ENST00000302516 CCT4P50991 539 aaKnown RBP9.08□□□□□ -0.96
SF3B3-201ENST00000302516 ERBINQ96RT1 1412 aa9.08□□□□□ -0.96
SF3B3-201ENST00000302516 MAP3K1Q13233 1512 aa9.08□□□□□ -0.96
SF3B3-201ENST00000302516 WDR63Q8IWG1 891 aa9.08□□□□□ -0.96
SF3B3-201ENST00000302516 TNMDQ9H2S6 317 aa9.08□□□□□ -0.96
SF3B3-201ENST00000302516 CTTNBP2Q8WZ74 1663 aa9.08□□□□□ -0.96
SF3B3-201ENST00000302516 UQCRHLA0A096LP55 91 aa9.08□□□□□ -0.96
SF3B3-201ENST00000302516 UQCRHP07919 91 aa9.08□□□□□ -0.96
SF3B3-201ENST00000302516 AXDND1Q5T1B0 1012 aaPredicted RBP9.08□□□□□ -0.96
SF3B3-201ENST00000302516 CDKL5O76039 1030 aa9.07□□□□□ -0.96
SF3B3-201ENST00000302516 MCM3P25205 808 aa9.07□□□□□ -0.96
SF3B3-201ENST00000302516 KIF21AQ7Z4S6 1674 aa9.07□□□□□ -0.96
SF3B3-201ENST00000302516 TBC1D2BQ9UPU7 963 aa9.07□□□□□ -0.96
SF3B3-201ENST00000302516 KRT85P78386 507 aa9.07□□□□□ -0.96
SF3B3-201ENST00000302516 CLASRPQ8N2M8 674 aaKnown RBP9.07□□□□□ -0.96
SF3B3-201ENST00000302516 GAS2L2Q8NHY3 880 aa9.07□□□□□ -0.96
SF3B3-201ENST00000302516 FSD1Q9BTV5 496 aa9.07□□□□□ -0.96
SF3B3-201ENST00000302516 PPFIBP1Q86W92 1011 aa9.07□□□□□ -0.96
SF3B3-201ENST00000302516 CYP46A1Q9Y6A2 500 aa9.07□□□□□ -0.96
SF3B3-201ENST00000302516 HMGXB3Q12766 1538 aa9.07□□□□□ -0.96
SF3B3-201ENST00000302516 CFAP45Q9UL16 551 aa9.07□□□□□ -0.96
SF3B3-201ENST00000302516 JPH4Q96JJ6 628 aa9.06□□□□□ -0.96
SF3B3-201ENST00000302516 MINK1Q8N4C8 1332 aaPredicted RBP9.06□□□□□ -0.96
SF3B3-201ENST00000302516 PCF11O94913 1555 aaKnown RBP9.06□□□□□ -0.96
SF3B3-201ENST00000302516 DHX29Q7Z478 1369 aaKnown RBP9.06□□□□□ -0.96
SF3B3-201ENST00000302516 ELL2O00472 640 aaPredicted RBP9.06□□□□□ -0.96
SF3B3-201ENST00000302516 EIF2S2P20042 333 aaKnown RBP9.06□□□□□ -0.96
SF3B3-201ENST00000302516 EIF2AK4Q9P2K8 1649 aaKnown RBP9.06□□□□□ -0.96
SF3B3-201ENST00000302516 GNAI2P04899 355 aa9.06□□□□□ -0.96
SF3B3-201ENST00000302516 ZSCAN31Q96LW9 406 aaPredicted RBP9.06□□□□□ -0.96
SF3B3-201ENST00000302516 KAT6BQ8WYB5 2073 aa9.06□□□□□ -0.96
SF3B3-201ENST00000302516 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.06□□□□□ -0.967e-7■■■□□ 15
SF3B3-201ENST00000302516 NKTRP30414 1462 aaKnown RBP9.06□□□□□ -0.96
SF3B3-201ENST00000302516 NEK4P51957 841 aa9.06□□□□□ -0.96
SF3B3-201ENST00000302516 CDK5RAP3Q96JB5 506 aa9.06□□□□□ -0.96
SF3B3-201ENST00000302516 PRPF40AO75400 957 aaKnown RBP9.06□□□□□ -0.96
SF3B3-201ENST00000302516 STK38Q15208 465 aa9.06□□□□□ -0.96
SF3B3-201ENST00000302516 CEP57L1Q8IYX8 460 aa9.05□□□□□ -0.96
SF3B3-201ENST00000302516 BRPF3Q9ULD4 1205 aa9.05□□□□□ -0.96
SF3B3-201ENST00000302516 GRIN2BQ13224 1484 aa9.05□□□□□ -0.96
SF3B3-201ENST00000302516 FAM107BQ9H098 131 aa9.05□□□□□ -0.96
SF3B3-201ENST00000302516 GBP3Q9H0R5 595 aa9.05□□□□□ -0.96
SF3B3-201ENST00000302516 CFTRP13569 1480 aa9.05□□□□□ -0.96
SF3B3-201ENST00000302516 CCDC9Q9Y3X0 531 aaKnown RBP9.05□□□□□ -0.96
SF3B3-201ENST00000302516 MAP9Q49MG5 647 aa9.05□□□□□ -0.96
SF3B3-201ENST00000302516 ZSCAN30Q86W11 494 aa9.05□□□□□ -0.96
SF3B3-201ENST00000302516 DNMBPQ6XZF7 1577 aa9.05□□□□□ -0.96
SF3B3-201ENST00000302516 ESPNB1AK53 854 aa9.04□□□□□ -0.96
SF3B3-201ENST00000302516 MCM5P33992 734 aa9.04□□□□□ -0.96
SF3B3-201ENST00000302516 RNF214Q8ND24 703 aa9.04□□□□□ -0.96
SF3B3-201ENST00000302516 FBXW7Q969H0 707 aa9.04□□□□□ -0.96
SF3B3-201ENST00000302516 SMTNL1A8MU46 457 aa9.04□□□□□ -0.96
SF3B3-201ENST00000302516 KRT32Q14532 448 aa9.04□□□□□ -0.96
SF3B3-201ENST00000302516 DEF6Q9H4E7 631 aa9.04□□□□□ -0.96
SF3B3-201ENST00000302516 SYCP1Q15431 976 aa9.04□□□□□ -0.96
SF3B3-201ENST00000302516 CCAR1Q8IX12 1150 aaKnown RBP9.04□□□□□ -0.96
SF3B3-201ENST00000302516 AQRO60306 1485 aaKnown RBP eCLIP9.04□□□□□ -0.963e-7■■■■■ 32.2
SF3B3-201ENST00000302516 SERPINC1P01008 464 aa9.04□□□□□ -0.96
SF3B3-201ENST00000302516 PPP2R1AP30153 589 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms