RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 PLEKHO1Q53GL0 409 aaPredicted RBP22.49■■□□□ 1.19
SMARCC1-201ENST00000254480 NINLQ9Y2I6 1382 aa22.49■■□□□ 1.19
SMARCC1-201ENST00000254480 GAS2L2Q8NHY3 880 aa22.49■■□□□ 1.19
SMARCC1-201ENST00000254480 CUX1P39880 1505 aa22.48■■□□□ 1.19
SMARCC1-201ENST00000254480 ATP2B2Q01814 1243 aa22.48■■□□□ 1.19
SMARCC1-201ENST00000254480 CFTRP13569 1480 aa22.48■■□□□ 1.19
SMARCC1-201ENST00000254480 HDGFL1Q5TGJ6 251 aa22.48■■□□□ 1.19
SMARCC1-201ENST00000254480 ZNF771Q7L3S4 317 aaPredicted RBP22.47■■□□□ 1.19
SMARCC1-201ENST00000254480 TBC1D2BQ9UPU7 963 aa22.47■■□□□ 1.19
SMARCC1-201ENST00000254480 CAVIN1Q6NZI2 390 aaKnown RBP22.47■■□□□ 1.19
SMARCC1-201ENST00000254480 TOM1L2Q6ZVM7 507 aa22.47■■□□□ 1.19
SMARCC1-201ENST00000254480 FANCIQ9NVI1 1328 aa22.47■■□□□ 1.19
SMARCC1-201ENST00000254480 SPINK5Q9NQ38 1064 aaPredicted RBP22.46■■□□□ 1.19
SMARCC1-201ENST00000254480 GNAI3P08754 354 aa22.46■■□□□ 1.19
SMARCC1-201ENST00000254480 NBPF8Q3BBV2 869 aa22.46■■□□□ 1.19
SMARCC1-201ENST00000254480 TTC39AQ5SRH9 613 aa22.45■■□□□ 1.18
SMARCC1-201ENST00000254480 CCDC85AQ96PX6 553 aaPredicted RBP22.45■■□□□ 1.18
SMARCC1-201ENST00000254480 CT47A1Q5JQC4 288 aaPredicted RBP22.45■■□□□ 1.18
SMARCC1-201ENST00000254480 RAPGEF3O95398 923 aa22.45■■□□□ 1.18
SMARCC1-201ENST00000254480 ZFYVE27Q5T4F4 411 aa22.45■■□□□ 1.18
SMARCC1-201ENST00000254480 CABP4P57796 275 aa22.44■■□□□ 1.18
SMARCC1-201ENST00000254480 MPNDQ8N594 471 aa22.44■■□□□ 1.18
SMARCC1-201ENST00000254480 BRD4O60885 1362 aaPredicted RBP22.44■■□□□ 1.18
SMARCC1-201ENST00000254480 FIBPO43427 364 aa22.44■■□□□ 1.18
SMARCC1-201ENST00000254480 BRMS1Q9HCU9 246 aa22.44■■□□□ 1.18
SMARCC1-201ENST00000254480 PRPF40AO75400 957 aaKnown RBP22.43■■□□□ 1.18
SMARCC1-201ENST00000254480 PSMA5P28066 241 aa22.43■■□□□ 1.18
SMARCC1-201ENST00000254480 BRPF1P55201 1214 aaPredicted RBP22.43■■□□□ 1.18
SMARCC1-201ENST00000254480 TATP17735 454 aaPredicted RBP22.43■■□□□ 1.18
SMARCC1-201ENST00000254480 AKNAQ7Z591 1439 aa22.43■■□□□ 1.18
SMARCC1-201ENST00000254480 EPS15P42566 896 aa22.43■■□□□ 1.18
SMARCC1-201ENST00000254480 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.43■■□□□ 1.18
SMARCC1-201ENST00000254480 GNAI2P04899 355 aa22.43■■□□□ 1.18
SMARCC1-201ENST00000254480 ZNF530Q6P9A1 599 aaPredicted RBP22.42■■□□□ 1.18
SMARCC1-201ENST00000254480 VSIG10Q8N0Z9 540 aa22.42■■□□□ 1.18
SMARCC1-201ENST00000254480 GPS2Q13227 327 aa22.42■■□□□ 1.18
SMARCC1-201ENST00000254480 OLFM4Q6UX06 510 aa22.42■■□□□ 1.18
SMARCC1-201ENST00000254480 PRG4Q92954 1404 aaPredicted RBP22.41■■□□□ 1.18
SMARCC1-201ENST00000254480 SCAPERQ9BY12 1400 aa22.41■■□□□ 1.18
SMARCC1-201ENST00000254480 PIP4K2BP78356 416 aa22.41■■□□□ 1.18
SMARCC1-201ENST00000254480 RSPH6AQ9H0K4 717 aa22.41■■□□□ 1.18
SMARCC1-201ENST00000254480 MIS18AQ9NYP9 233 aa22.41■■□□□ 1.18
SMARCC1-201ENST00000254480 RRBP1Q9P2E9 1410 aaKnown RBP22.4■■□□□ 1.18
SMARCC1-201ENST00000254480 SKIDA1Q1XH10 827 aa22.4■■□□□ 1.18
SMARCC1-201ENST00000254480 CCDC184Q52MB2 194 aa22.4■■□□□ 1.18
SMARCC1-201ENST00000254480 OFD1O75665 1012 aa22.39■■□□□ 1.18
SMARCC1-201ENST00000254480 FYCO1Q9BQS8 1478 aa22.39■■□□□ 1.18
SMARCC1-201ENST00000254480 XBP1P17861 261 aa22.39■■□□□ 1.18
SMARCC1-201ENST00000254480 NASPP49321 788 aaPredicted RBP22.39■■□□□ 1.17
SMARCC1-201ENST00000254480 SART3Q15020 963 aaKnown RBP22.39■■□□□ 1.17
SMARCC1-201ENST00000254480 SMC2O95347 1197 aa22.38■■□□□ 1.17
SMARCC1-201ENST00000254480 MNS1Q8NEH6 495 aa22.38■■□□□ 1.17
SMARCC1-201ENST00000254480 BICDL1Q6ZP65 573 aa22.38■■□□□ 1.17
SMARCC1-201ENST00000254480 R3HCC1Q9Y3T6 440 aaKnown RBP22.38■■□□□ 1.17
SMARCC1-201ENST00000254480 FAM43AQ8N2R8 423 aa22.37■■□□□ 1.17
SMARCC1-201ENST00000254480 ODF2Q5BJF6 829 aa22.37■■□□□ 1.17
SMARCC1-201ENST00000254480 TRAK2O60296 914 aa22.37■■□□□ 1.17
SMARCC1-201ENST00000254480 FKBP4Q02790 459 aaKnown RBP eCLIP22.37■■□□□ 1.17
SMARCC1-201ENST00000254480 TRIM5Q9C035 493 aa22.37■■□□□ 1.17
SMARCC1-201ENST00000254480 ZC3H6P61129 1189 aaKnown RBP22.37■■□□□ 1.17
SMARCC1-201ENST00000254480 CCDC158Q5M9N0 1113 aa22.37■■□□□ 1.17
SMARCC1-201ENST00000254480 TMEM132AQ24JP5 1023 aa22.36■■□□□ 1.17
SMARCC1-201ENST00000254480 CASKIN1Q8WXD9 1431 aa22.36■■□□□ 1.17
SMARCC1-201ENST00000254480 SMG6Q86US8 1419 aaKnown RBP22.36■■□□□ 1.17
SMARCC1-201ENST00000254480 IL1RAPL2Q9NP60 686 aa22.36■■□□□ 1.17
SMARCC1-201ENST00000254480 SPC24Q8NBT2 197 aa22.36■■□□□ 1.17
SMARCC1-201ENST00000254480 PIBF1Q8WXW3 757 aa22.35■■□□□ 1.17
SMARCC1-201ENST00000254480 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.34■■□□□ 1.172e-6■■■■■ 104.5
SMARCC1-201ENST00000254480 THUMPD2Q9BTF0 503 aaKnown RBP22.34■■□□□ 1.17
SMARCC1-201ENST00000254480 NUP133Q8WUM0 1156 aa22.34■■□□□ 1.17
SMARCC1-201ENST00000254480 STAC3Q96MF2 364 aa22.34■■□□□ 1.17
SMARCC1-201ENST00000254480 ARAP1Q96P48 1450 aa22.33■■□□□ 1.17
SMARCC1-201ENST00000254480 SETQ01105 290 aaPredicted RBP22.33■■□□□ 1.17
SMARCC1-201ENST00000254480 LRRCC1Q9C099 1032 aa22.33■■□□□ 1.16
SMARCC1-201ENST00000254480 KINO60870 393 aaKnown RBP22.33■■□□□ 1.16
SMARCC1-201ENST00000254480 RBM5P52756 815 aaKnown RBP eCLIP22.33■■□□□ 1.16
SMARCC1-201ENST00000254480 CDK5RAP3Q96JB5 506 aa22.33■■□□□ 1.16
SMARCC1-201ENST00000254480 NAT10Q9H0A0 1025 aaKnown RBP22.32■■□□□ 1.16
SMARCC1-201ENST00000254480 CAGE1Q8TC20 777 aa22.32■■□□□ 1.16
SMARCC1-201ENST00000254480 NESP48681 1621 aa22.32■■□□□ 1.16
SMARCC1-201ENST00000254480 RUFY1Q96T51 708 aa22.32■■□□□ 1.16
SMARCC1-201ENST00000254480 SRCIN1Q9C0H9 1055 aa22.32■■□□□ 1.16
SMARCC1-201ENST00000254480 AACSQ86V21 672 aa22.31■■□□□ 1.16
SMARCC1-201ENST00000254480 SYNJ2O15056 1496 aa22.31■■□□□ 1.16
SMARCC1-201ENST00000254480 STK38Q15208 465 aa22.31■■□□□ 1.16
SMARCC1-201ENST00000254480 C9orf84Q5VXU9 1444 aa22.31■■□□□ 1.16
SMARCC1-201ENST00000254480 HSP90AB2PQ58FF8 381 aa22.31■■□□□ 1.16
SMARCC1-201ENST00000254480 ZHX3Q9H4I2 956 aa22.31■■□□□ 1.16
SMARCC1-201ENST00000254480 BTBD11A6QL63 1104 aa22.3■■□□□ 1.16
SMARCC1-201ENST00000254480 KRT18P05783 430 aaKnown RBP22.3■■□□□ 1.16
SMARCC1-201ENST00000254480 PRDM11Q9NQV5 511 aa22.3■■□□□ 1.16
SMARCC1-201ENST00000254480 CWC27Q6UX04 472 aaKnown RBP22.3■■□□□ 1.16
SMARCC1-201ENST00000254480 RTEL1-TNFRSF6BF6WH68 1400 aa22.3■■□□□ 1.16
SMARCC1-201ENST00000254480 SRGAP3O43295 1099 aa22.29■■□□□ 1.16
SMARCC1-201ENST00000254480 THEMISQ8N1K5 641 aaPredicted RBP22.29■■□□□ 1.16
SMARCC1-201ENST00000254480 DCTN1Q14203 1278 aa22.29■■□□□ 1.16
SMARCC1-201ENST00000254480 KRI1Q8N9T8 703 aaKnown RBP22.29■■□□□ 1.16
SMARCC1-201ENST00000254480 MPHOSPH8Q99549 860 aa22.29■■□□□ 1.16
SMARCC1-201ENST00000254480 GCC1Q96CN9 775 aa22.29■■□□□ 1.16
SMARCC1-201ENST00000254480 ERC1Q8IUD2 1116 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms