RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 RBM33Q96EV2 1170 aaKnown RBP22.08■■□□□ 1.13
FOXA1-201ENST00000250448 TERF2IPQ9NYB0 399 aa22.07■■□□□ 1.12
FOXA1-201ENST00000250448 NUDT16Q96DE0 195 aaKnown RBP22.07■■□□□ 1.12
FOXA1-201ENST00000250448 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.06■■□□□ 1.12
FOXA1-201ENST00000250448 KCNA6P17658 529 aa22.06■■□□□ 1.12
FOXA1-201ENST00000250448 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.06■■□□□ 1.12
FOXA1-201ENST00000250448 SIRT1Q96EB6 747 aa22.05■■□□□ 1.12
FOXA1-201ENST00000250448 PRR36Q9H6K5 1346 aa22.05■■□□□ 1.12
FOXA1-201ENST00000250448 WDR43Q15061 677 aaKnown RBP eCLIP22.05■■□□□ 1.12
FOXA1-201ENST00000250448 DUSP27Q5VZP5 1158 aa22.05■■□□□ 1.12
FOXA1-201ENST00000250448 CENPQQ7L2Z9 268 aaPredicted RBP22.05■■□□□ 1.12
FOXA1-201ENST00000250448 HDGFL2Q7Z4V5 671 aaPredicted RBP22.05■■□□□ 1.12
FOXA1-201ENST00000250448 ZNF142P52746 1687 aaPredicted RBP22.04■■□□□ 1.12
FOXA1-201ENST00000250448 PPIP5K1Q6PFW1 1433 aa22.03■■□□□ 1.12
FOXA1-201ENST00000250448 NINLQ9Y2I6 1382 aa22.03■■□□□ 1.12
FOXA1-201ENST00000250448 ZNF521Q96K83 1311 aa22.02■■□□□ 1.12
FOXA1-201ENST00000250448 FYB1O15117 783 aa22.01■■□□□ 1.11
FOXA1-201ENST00000250448 CCDC61Q9Y6R9 512 aa22■■□□□ 1.11
FOXA1-201ENST00000250448 GOLGA2Q08379 1002 aa21.99■■□□□ 1.11
FOXA1-201ENST00000250448 FBLN1P23142 703 aa21.98■■□□□ 1.11
FOXA1-201ENST00000250448 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.98■■□□□ 1.11
FOXA1-201ENST00000250448 MTHFSP49914 203 aa21.98■■□□□ 1.11
FOXA1-201ENST00000250448 USP32Q8NFA0 1604 aa21.97■■□□□ 1.11
FOXA1-201ENST00000250448 CCDC146Q8IYE0 955 aa21.97■■□□□ 1.11
FOXA1-201ENST00000250448 ATP7BP35670 1465 aa21.97■■□□□ 1.11
FOXA1-201ENST00000250448 DIP2AQ14689 1571 aa21.97■■□□□ 1.11
FOXA1-201ENST00000250448 IL27Q8NEV9 243 aa21.97■■□□□ 1.11
FOXA1-201ENST00000250448 ZRANB1Q9UGI0 708 aa21.97■■□□□ 1.11
FOXA1-201ENST00000250448 PODXL2Q9NZ53 605 aa21.96■■□□□ 1.11
FOXA1-201ENST00000250448 FAM161AQ3B820 660 aa21.96■■□□□ 1.11
FOXA1-201ENST00000250448 HSPA2P54652 639 aa21.95■■□□□ 1.1
FOXA1-201ENST00000250448 PMFBP1Q8TBY8 1022 aa21.94■■□□□ 1.1
FOXA1-201ENST00000250448 PTCH1Q13635 1447 aa21.94■■□□□ 1.1
FOXA1-201ENST00000250448 XRN1Q8IZH2 1706 aaKnown RBP21.94■■□□□ 1.1
FOXA1-201ENST00000250448 NME9Q86XW9 330 aa21.94■■□□□ 1.1
FOXA1-201ENST00000250448 NPHP4O75161 1426 aaPredicted RBP21.93■■□□□ 1.1
FOXA1-201ENST00000250448 SLFN5Q08AF3 891 aa21.93■■□□□ 1.1
FOXA1-201ENST00000250448 C8orf34Q49A92 452 aa21.93■■□□□ 1.1
FOXA1-201ENST00000250448 KDM4FA0A1W2PPD8 638 aa21.92■■□□□ 1.1
FOXA1-201ENST00000250448 CPSF1Q10570 1443 aaKnown RBP21.92■■□□□ 1.1
FOXA1-201ENST00000250448 NSD2O96028 1365 aa21.91■■□□□ 1.1
FOXA1-201ENST00000250448 NFKBIBQ15653 356 aa21.9■■□□□ 1.1
FOXA1-201ENST00000250448 ADGRB2O60241 1585 aa21.9■■□□□ 1.1
FOXA1-201ENST00000250448 ACEP12821 1306 aa21.9■■□□□ 1.1
FOXA1-201ENST00000250448 SLC4A3P48751 1232 aa21.9■■□□□ 1.1
FOXA1-201ENST00000250448 TRMT2AQ8IZ69 625 aaKnown RBP21.89■■□□□ 1.1
FOXA1-201ENST00000250448 NKTRP30414 1462 aaKnown RBP21.89■■□□□ 1.09
FOXA1-201ENST00000250448 CDC42BPGQ6DT37 1551 aa21.89■■□□□ 1.09
FOXA1-201ENST00000250448 PIK3R4Q99570 1358 aa21.88■■□□□ 1.09
FOXA1-201ENST00000250448 POLR3AO14802 1390 aaPredicted RBP21.88■■□□□ 1.09
FOXA1-201ENST00000250448 CHD2O14647 1828 aaKnown RBP21.88■■□□□ 1.09
FOXA1-201ENST00000250448 RGPD8O14715 1765 aaPredicted RBP21.88■■□□□ 1.09
FOXA1-201ENST00000250448 PKNOX2Q96KN3 472 aa21.87■■□□□ 1.09
FOXA1-201ENST00000250448 KIF20BQ96Q89 1820 aa21.86■■□□□ 1.09
FOXA1-201ENST00000250448 EDC4Q6P2E9 1401 aaKnown RBP21.86■■□□□ 1.09
FOXA1-201ENST00000250448 VIRMAQ69YN4 1812 aaKnown RBP21.86■■□□□ 1.09
FOXA1-201ENST00000250448 GSE1Q14687 1217 aa21.85■■□□□ 1.09
FOXA1-201ENST00000250448 RGS3P49796 1198 aa21.85■■□□□ 1.09
FOXA1-201ENST00000250448 C14orf37Q86TY3 774 aa21.85■■□□□ 1.09
FOXA1-201ENST00000250448 APAF1O14727 1248 aa21.84■■□□□ 1.09
FOXA1-201ENST00000250448 SPINK5Q9NQ38 1064 aaPredicted RBP21.84■■□□□ 1.09
FOXA1-201ENST00000250448 ITSN1Q15811 1721 aa21.83■■□□□ 1.09
FOXA1-201ENST00000250448 CFAP53Q96M91 514 aa21.83■■□□□ 1.09
FOXA1-201ENST00000250448 PLEKHG3A1L390 1219 aa21.82■■□□□ 1.08
FOXA1-201ENST00000250448 NGDNQ8NEJ9 315 aaKnown RBP21.82■■□□□ 1.08
FOXA1-201ENST00000250448 RTN4Q9NQC3 1192 aaKnown RBP21.82■■□□□ 1.08
FOXA1-201ENST00000250448 ANKRD26Q9UPS8 1709 aa21.82■■□□□ 1.08
FOXA1-201ENST00000250448 SHPRHQ149N8 1683 aa21.82■■□□□ 1.08
FOXA1-201ENST00000250448 TOPAZ1Q8N9V7 1692 aa21.82■■□□□ 1.08
FOXA1-201ENST00000250448 AKAP12Q02952 1782 aa21.81■■□□□ 1.08
FOXA1-201ENST00000250448 MON2Q7Z3U7 1717 aa21.81■■□□□ 1.08
FOXA1-201ENST00000250448 SOX12O15370 315 aa21.81■■□□□ 1.08
FOXA1-201ENST00000250448 ZNF692Q9BU19 519 aaPredicted RBP21.81■■□□□ 1.08
FOXA1-201ENST00000250448 E9PSI1 815 aa21.81■■□□□ 1.08
FOXA1-201ENST00000250448 NALCNQ8IZF0 1738 aa21.8■■□□□ 1.08
FOXA1-201ENST00000250448 TTC21BQ7Z4L5 1316 aa21.8■■□□□ 1.08
FOXA1-201ENST00000250448 EMILIN1Q9Y6C2 1016 aa21.8■■□□□ 1.08
FOXA1-201ENST00000250448 U2SURPO15042 1029 aaKnown RBP21.8■■□□□ 1.08
FOXA1-201ENST00000250448 BCAR3O75815 825 aa21.8■■□□□ 1.08
FOXA1-201ENST00000250448 U2AF1L5P0DN76 240 aaPredicted RBP21.79■■□□□ 1.08
FOXA1-201ENST00000250448 U2AF1Q01081 240 aaKnown RBP eCLIP21.79■■□□□ 1.08
FOXA1-201ENST00000250448 RRS1Q15050 365 aaKnown RBP21.79■■□□□ 1.08
FOXA1-201ENST00000250448 COG3Q96JB2 828 aa21.79■■□□□ 1.08
FOXA1-201ENST00000250448 NEUROD2Q15784 382 aa21.78■■□□□ 1.08
FOXA1-201ENST00000250448 POLKQ9UBT6 870 aa21.78■■□□□ 1.08
FOXA1-201ENST00000250448 RRP7AQ9Y3A4 280 aaKnown RBP21.78■■□□□ 1.08
FOXA1-201ENST00000250448 USP6P35125 1406 aa21.78■■□□□ 1.08
FOXA1-201ENST00000250448 PROSER2Q86WR7 435 aaPredicted RBP21.77■■□□□ 1.08
FOXA1-201ENST00000250448 NGEFQ8N5V2 710 aa21.76■■□□□ 1.07
FOXA1-201ENST00000250448 FRAT1Q92837 279 aaPredicted RBP21.76■■□□□ 1.07
FOXA1-201ENST00000250448 NUTM2GQ5VZR2 741 aa21.75■■□□□ 1.07
FOXA1-201ENST00000250448 BRPF3Q9ULD4 1205 aa21.74■■□□□ 1.07
FOXA1-201ENST00000250448 MAP2P11137 1827 aaKnown RBP21.74■■□□□ 1.07
FOXA1-201ENST00000250448 DMRT2Q9Y5R5 561 aa21.74■■□□□ 1.07
FOXA1-201ENST00000250448 FMN2Q9NZ56 1722 aa21.74■■□□□ 1.07
FOXA1-201ENST00000250448 IGHDP01880 384 aa21.73■■□□□ 1.07
FOXA1-201ENST00000250448 PDE3AQ14432 1141 aa21.73■■□□□ 1.07
FOXA1-201ENST00000250448 ADGRL3Q9HAR2 1447 aa21.72■■□□□ 1.07
FOXA1-201ENST00000250448 COL3A1P02461 1466 aaPredicted RBP21.72■■□□□ 1.07
FOXA1-201ENST00000250448 ESCO1Q5FWF5 840 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms