RNA–Protein interactions for RNA: ENST00000248594.10

PTPN12-201, Transcript of protein tyrosine phosphatase, non-receptor type 12, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN12, Length 3,406 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN12-201ENST00000248594 ZNF445P59923 1031 aa22.47■■□□□ 1.19
PTPN12-201ENST00000248594 RTEL1-TNFRSF6BF6WH68 1400 aa22.47■■□□□ 1.19
PTPN12-201ENST00000248594 AK9Q5TCS8 1911 aa22.46■■□□□ 1.19
PTPN12-201ENST00000248594 USP25Q9UHP3 1055 aa22.46■■□□□ 1.19
PTPN12-201ENST00000248594 RBM25P49756 843 aaKnown RBP22.46■■□□□ 1.19
PTPN12-201ENST00000248594 KIF16BQ96L93 1317 aa22.46■■□□□ 1.19
PTPN12-201ENST00000248594 KCNJ4P48050 445 aa22.45■■□□□ 1.19
PTPN12-201ENST00000248594 TBC1D9Q6ZT07 1266 aa22.45■■□□□ 1.19
PTPN12-201ENST00000248594 TMEM51Q9NW97 253 aa22.45■■□□□ 1.19
PTPN12-201ENST00000248594 HS1BP3Q53T59 392 aa22.45■■□□□ 1.18
PTPN12-201ENST00000248594 TMEM57Q8N5G2 664 aa22.45■■□□□ 1.18
PTPN12-201ENST00000248594 GTPBP4Q9BZE4 634 aaKnown RBP22.45■■□□□ 1.18
PTPN12-201ENST00000248594 U2AF1L5P0DN76 240 aaPredicted RBP22.45■■□□□ 1.18
PTPN12-201ENST00000248594 U2AF1Q01081 240 aaKnown RBP eCLIP22.45■■□□□ 1.18
PTPN12-201ENST00000248594 TRIM27P14373 513 aa22.44■■□□□ 1.18
PTPN12-201ENST00000248594 EXOSC9Q06265 439 aaKnown RBP22.44■■□□□ 1.18
PTPN12-201ENST00000248594 ERICH4A6NGS2 130 aa22.44■■□□□ 1.18
PTPN12-201ENST00000248594 BCL2L12Q9HB09 334 aa22.44■■□□□ 1.18
PTPN12-201ENST00000248594 TROQ12816 1431 aaPredicted RBP22.44■■□□□ 1.18
PTPN12-201ENST00000248594 MORC1Q86VD1 984 aa22.44■■□□□ 1.18
PTPN12-201ENST00000248594 LETM1O95202 739 aaPredicted RBP22.43■■□□□ 1.18
PTPN12-201ENST00000248594 NOB1Q9ULX3 412 aaKnown RBP22.43■■□□□ 1.18
PTPN12-201ENST00000248594 NOLC1Q14978 699 aaKnown RBP eCLIP22.43■■□□□ 1.18
PTPN12-201ENST00000248594 PDLIM2Q96JY6 352 aa22.43■■□□□ 1.18
PTPN12-201ENST00000248594 KIF2CQ99661 725 aa22.43■■□□□ 1.18
PTPN12-201ENST00000248594 KIF20AO95235 890 aa22.43■■□□□ 1.18
PTPN12-201ENST00000248594 MAGI2Q86UL8 1455 aa22.42■■□□□ 1.18
PTPN12-201ENST00000248594 CHD1LQ86WJ1 897 aa22.42■■□□□ 1.18
PTPN12-201ENST00000248594 CERS3Q8IU89 383 aa22.42■■□□□ 1.18
PTPN12-201ENST00000248594 U2SURPO15042 1029 aaKnown RBP22.41■■□□□ 1.18
PTPN12-201ENST00000248594 NUCB2P80303 420 aa22.41■■□□□ 1.18
PTPN12-201ENST00000248594 SPC24Q8NBT2 197 aa22.41■■□□□ 1.18
PTPN12-201ENST00000248594 LRSAM1Q6UWE0 723 aa22.41■■□□□ 1.18
PTPN12-201ENST00000248594 AEBP1Q8IUX7 1158 aa22.4■■□□□ 1.18
PTPN12-201ENST00000248594 COL17A1Q9UMD9 1497 aaPredicted RBP22.4■■□□□ 1.18
PTPN12-201ENST00000248594 SSH1Q8WYL5 1049 aa22.4■■□□□ 1.18
PTPN12-201ENST00000248594 DDX19BQ9UMR2 479 aa22.4■■□□□ 1.18
PTPN12-201ENST00000248594 CHAF1AQ13111 956 aaPredicted RBP22.39■■□□□ 1.18
PTPN12-201ENST00000248594 TSPY26PQ9H489 355 aa22.38■■□□□ 1.17
PTPN12-201ENST00000248594 DNMT1P26358 1616 aaKnown RBP22.38■■□□□ 1.17
PTPN12-201ENST00000248594 ELL2O00472 640 aaPredicted RBP22.38■■□□□ 1.17
PTPN12-201ENST00000248594 CFAP70Q5T0N1 1121 aa22.38■■□□□ 1.17
PTPN12-201ENST00000248594 RUNDC1Q96C34 613 aa22.38■■□□□ 1.17
PTPN12-201ENST00000248594 PRAG1Q86YV5 1406 aa22.38■■□□□ 1.17
PTPN12-201ENST00000248594 NINLQ9Y2I6 1382 aa22.37■■□□□ 1.17
PTPN12-201ENST00000248594 HMGN5P82970 282 aaKnown RBP22.37■■□□□ 1.17
PTPN12-201ENST00000248594 INSRP06213 1382 aa22.37■■□□□ 1.17
PTPN12-201ENST00000248594 CDCA8Q53HL2 280 aa22.36■■□□□ 1.17
PTPN12-201ENST00000248594 MCM5P33992 734 aa22.36■■□□□ 1.17
PTPN12-201ENST00000248594 ABCC2Q92887 1545 aa22.34■■□□□ 1.17
PTPN12-201ENST00000248594 TRAK1Q9UPV9 953 aa22.34■■□□□ 1.17
PTPN12-201ENST00000248594 ATP10BO94823 1461 aa22.34■■□□□ 1.17
PTPN12-201ENST00000248594 AFAP1Q8N556 730 aa22.34■■□□□ 1.17
PTPN12-201ENST00000248594 RIOK3O14730 519 aaKnown RBP22.33■■□□□ 1.17
PTPN12-201ENST00000248594 ATF7IPQ6VMQ6 1270 aa22.33■■□□□ 1.17
PTPN12-201ENST00000248594 ZBTB9Q96C00 473 aa22.32■■□□□ 1.16
PTPN12-201ENST00000248594 NCOA3Q9Y6Q9 1424 aa22.32■■□□□ 1.16
PTPN12-201ENST00000248594 VIRMAQ69YN4 1812 aaKnown RBP22.32■■□□□ 1.16
PTPN12-201ENST00000248594 DTNBO60941 627 aa22.31■■□□□ 1.16
PTPN12-201ENST00000248594 ADCY5O95622 1261 aa22.31■■□□□ 1.16
PTPN12-201ENST00000248594 NUCB1Q02818 461 aa22.31■■□□□ 1.16
PTPN12-201ENST00000248594 TMEM132EQ6IEE7 984 aa22.31■■□□□ 1.16
PTPN12-201ENST00000248594 IPO4Q8TEX9 1081 aaKnown RBP22.31■■□□□ 1.16
PTPN12-201ENST00000248594 ZNF592Q92610 1267 aa22.31■■□□□ 1.16
PTPN12-201ENST00000248594 PRIMPOLQ96LW4 560 aa22.31■■□□□ 1.16
PTPN12-201ENST00000248594 MTHFSP49914 203 aa22.3■■□□□ 1.16
PTPN12-201ENST00000248594 NPHP1O15259 732 aa22.3■■□□□ 1.16
PTPN12-201ENST00000248594 HDAC1Q13547 482 aaPredicted RBP22.3■■□□□ 1.16
PTPN12-201ENST00000248594 NAA30Q147X3 362 aaPredicted RBP22.3■■□□□ 1.16
PTPN12-201ENST00000248594 HCLS1P14317 486 aaPredicted RBP22.29■■□□□ 1.16
PTPN12-201ENST00000248594 UHRF1BP1LA0JNW5 1464 aa22.29■■□□□ 1.16
PTPN12-201ENST00000248594 CARD14Q9BXL6 1004 aa22.28■■□□□ 1.16
PTPN12-201ENST00000248594 BMP2KLQ5H9B9 411 aa22.28■■□□□ 1.16
PTPN12-201ENST00000248594 SLC12A5Q9H2X9 1139 aa22.28■■□□□ 1.16
PTPN12-201ENST00000248594 CDC45O75419 566 aa22.27■■□□□ 1.16
PTPN12-201ENST00000248594 E9PCH4 1651 aa22.27■■□□□ 1.16
PTPN12-201ENST00000248594 PIBF1Q8WXW3 757 aa22.27■■□□□ 1.16
PTPN12-201ENST00000248594 ST18O60284 1047 aa22.27■■□□□ 1.15
PTPN12-201ENST00000248594 RABEP1Q15276 862 aa22.26■■□□□ 1.15
PTPN12-201ENST00000248594 CHMP3Q9Y3E7 222 aa22.26■■□□□ 1.15
PTPN12-201ENST00000248594 NOL12Q9UGY1 213 aaKnown RBP eCLIP22.26■■□□□ 1.15
PTPN12-201ENST00000248594 V9GYY5 206 aaPredicted RBP22.26■■□□□ 1.15
PTPN12-201ENST00000248594 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.25■■□□□ 1.15
PTPN12-201ENST00000248594 GADD45BO75293 160 aaPredicted RBP22.25■■□□□ 1.15
PTPN12-201ENST00000248594 C16orf71Q8IYS4 520 aaPredicted RBP22.25■■□□□ 1.15
PTPN12-201ENST00000248594 ZFP91Q96JP5 570 aaPredicted RBP22.25■■□□□ 1.15
PTPN12-201ENST00000248594 ADCY10Q96PN6 1610 aa22.25■■□□□ 1.15
PTPN12-201ENST00000248594 IBTKQ9P2D0 1353 aaPredicted RBP22.25■■□□□ 1.15
PTPN12-201ENST00000248594 SMARCA5O60264 1052 aaPredicted RBP22.25■■□□□ 1.15
PTPN12-201ENST00000248594 NEK4P51957 841 aa22.24■■□□□ 1.15
PTPN12-201ENST00000248594 ZDHHC9Q9Y397 364 aa22.24■■□□□ 1.15
PTPN12-201ENST00000248594 DRC7Q8IY82 874 aa22.23■■□□□ 1.15
PTPN12-201ENST00000248594 C16orf45Q96MC5 204 aaPredicted RBP22.23■■□□□ 1.15
PTPN12-201ENST00000248594 CFAP53Q96M91 514 aa22.23■■□□□ 1.15
PTPN12-201ENST00000248594 ZCCHC11Q5TAX3 1644 aaKnown RBP22.23■■□□□ 1.15
PTPN12-201ENST00000248594 IRX5P78411 483 aaPredicted RBP22.22■■□□□ 1.15
PTPN12-201ENST00000248594 DIAPH3Q9NSV4 1193 aa22.22■■□□□ 1.15
PTPN12-201ENST00000248594 ZBTB40Q9NUA8 1239 aa22.22■■□□□ 1.15
PTPN12-201ENST00000248594 PYCARDQ9ULZ3 195 aa22.22■■□□□ 1.15
PTPN12-201ENST00000248594 WDR63Q8IWG1 891 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms