RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 SUPT16HQ9Y5B9 1047 aaKnown RBP11.79□□□□□ -0.52
VPS4B-201ENST00000238497 TMC1Q8TDI8 760 aa11.78□□□□□ -0.52
VPS4B-201ENST00000238497 SOX12O15370 315 aa11.78□□□□□ -0.52
VPS4B-201ENST00000238497 NHSL1Q5SYE7 1610 aa11.78□□□□□ -0.52
VPS4B-201ENST00000238497 ACEP12821 1306 aa11.78□□□□□ -0.52
VPS4B-201ENST00000238497 CABP1Q9NZU7 370 aa11.78□□□□□ -0.52
VPS4B-201ENST00000238497 DLC1Q96QB1 1528 aa11.78□□□□□ -0.52
VPS4B-201ENST00000238497 ABTB2Q8N961 1025 aa11.77□□□□□ -0.52
VPS4B-201ENST00000238497 KNDC1Q76NI1 1749 aa11.77□□□□□ -0.53
VPS4B-201ENST00000238497 ZC3H6P61129 1189 aaKnown RBP11.77□□□□□ -0.53
VPS4B-201ENST00000238497 PRDM11Q9NQV5 511 aa11.77□□□□□ -0.53
VPS4B-201ENST00000238497 EVC2Q86UK5 1308 aa11.77□□□□□ -0.53
VPS4B-201ENST00000238497 PXDNQ92626 1479 aa11.76□□□□□ -0.53
VPS4B-201ENST00000238497 ANKARQ7Z5J8 1434 aa11.76□□□□□ -0.53
VPS4B-201ENST00000238497 TNS3Q68CZ2 1445 aa11.76□□□□□ -0.53
VPS4B-201ENST00000238497 ARHGEF10O15013 1369 aa11.76□□□□□ -0.53
VPS4B-201ENST00000238497 SHPRHQ149N8 1683 aa11.75□□□□□ -0.53
VPS4B-201ENST00000238497 ST20-MTHFSA0A0A6YYL1 179 aa11.75□□□□□ -0.53
VPS4B-201ENST00000238497 CHRNA2Q15822 529 aa11.75□□□□□ -0.53
VPS4B-201ENST00000238497 FMN2Q9NZ56 1722 aa11.75□□□□□ -0.53
VPS4B-201ENST00000238497 STRN4Q9NRL3 753 aa11.75□□□□□ -0.53
VPS4B-201ENST00000238497 RGPD8O14715 1765 aaPredicted RBP11.74□□□□□ -0.53
VPS4B-201ENST00000238497 BTG4Q9NY30 223 aa11.74□□□□□ -0.53
VPS4B-201ENST00000238497 USP35Q9P2H5 1018 aa11.74□□□□□ -0.53
VPS4B-201ENST00000238497 UNC5CLQ8IV45 518 aa11.73□□□□□ -0.53
VPS4B-201ENST00000238497 FNBP4Q8N3X1 1017 aaPredicted RBP11.73□□□□□ -0.53
VPS4B-201ENST00000238497 TULP4Q9NRJ4 1543 aa11.73□□□□□ -0.53
VPS4B-201ENST00000238497 SBNO1A3KN83 1393 aa11.73□□□□□ -0.53
VPS4B-201ENST00000238497 FAM83GA6ND36 823 aa11.73□□□□□ -0.53
VPS4B-201ENST00000238497 NLRP6P59044 892 aa11.73□□□□□ -0.53
VPS4B-201ENST00000238497 PPIP5K1Q6PFW1 1433 aa11.72□□□□□ -0.53
VPS4B-201ENST00000238497 KIF7Q2M1P5 1343 aa11.72□□□□□ -0.53
VPS4B-201ENST00000238497 EVA1CP58658 441 aa11.72□□□□□ -0.53
VPS4B-201ENST00000238497 GJD4Q96KN9 370 aaPredicted RBP11.72□□□□□ -0.53
VPS4B-201ENST00000238497 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.71□□□□□ -0.53
VPS4B-201ENST00000238497 ATP7BP35670 1465 aa11.7□□□□□ -0.54
VPS4B-201ENST00000238497 PLEKHG3A1L390 1219 aa11.7□□□□□ -0.54
VPS4B-201ENST00000238497 CCER2I3L3R5 266 aa11.7□□□□□ -0.54
VPS4B-201ENST00000238497 NLRP13Q86W25 1043 aa11.7□□□□□ -0.54
VPS4B-201ENST00000238497 KIF1AQ12756 1690 aa11.7□□□□□ -0.54
VPS4B-201ENST00000238497 ARHGEF28Q8N1W1 1705 aaKnown RBP11.7□□□□□ -0.54
VPS4B-201ENST00000238497 FAM98CQ17RN3 349 aaKnown RBP11.69□□□□□ -0.54
VPS4B-201ENST00000238497 PRKRIP1Q9H875 184 aaPredicted RBP11.68□□□□□ -0.54
VPS4B-201ENST00000238497 USP47Q96K76 1375 aa11.68□□□□□ -0.54
VPS4B-201ENST00000238497 KIAA0232Q92628 1395 aa11.68□□□□□ -0.54
VPS4B-201ENST00000238497 UPF1Q92900 1129 aaKnown RBP eCLIP11.68□□□□□ -0.54
VPS4B-201ENST00000238497 CCDC7Q96M83 1385 aa11.67□□□□□ -0.54
VPS4B-201ENST00000238497 CC2D1BQ5T0F9 858 aaKnown RBP11.67□□□□□ -0.54
VPS4B-201ENST00000238497 SLC12A5Q9H2X9 1139 aa11.67□□□□□ -0.54
VPS4B-201ENST00000238497 USP32Q8NFA0 1604 aa11.67□□□□□ -0.54
VPS4B-201ENST00000238497 ADGRB2O60241 1585 aa11.67□□□□□ -0.54
VPS4B-201ENST00000238497 SEPT12Q8IYM1 358 aa11.67□□□□□ -0.54
VPS4B-201ENST00000238497 BCL9LQ86UU0 1499 aa11.66□□□□□ -0.54
VPS4B-201ENST00000238497 RGS12O14924 1447 aa11.66□□□□□ -0.54
VPS4B-201ENST00000238497 HDGFL2Q7Z4V5 671 aaPredicted RBP11.66□□□□□ -0.54
VPS4B-201ENST00000238497 GCP02774 474 aa11.66□□□□□ -0.54
VPS4B-201ENST00000238497 KIAA1210Q9ULL0 1709 aa11.65□□□□□ -0.54
VPS4B-201ENST00000238497 VPS72Q15906 364 aa11.65□□□□□ -0.54
VPS4B-201ENST00000238497 ZNF692Q9BU19 519 aaPredicted RBP11.65□□□□□ -0.54
VPS4B-201ENST00000238497 CSB-PGBD3P0DP91 1061 aa11.65□□□□□ -0.55
VPS4B-201ENST00000238497 FAM182BQ5T319 152 aa11.65□□□□□ -0.55
VPS4B-201ENST00000238497 ATAD2Q6PL18 1390 aa11.64□□□□□ -0.55
VPS4B-201ENST00000238497 KTN1Q86UP2 1357 aaKnown RBP11.64□□□□□ -0.55
VPS4B-201ENST00000238497 POLR3AO14802 1390 aaPredicted RBP11.64□□□□□ -0.55
VPS4B-201ENST00000238497 ATRNO75882 1429 aa11.63□□□□□ -0.55
VPS4B-201ENST00000238497 SF3B2Q13435 895 aaKnown RBP11.63□□□□□ -0.55
VPS4B-201ENST00000238497 TRPM1Q7Z4N2 1603 aa11.63□□□□□ -0.55
VPS4B-201ENST00000238497 TTC21BQ7Z4L5 1316 aa11.63□□□□□ -0.55
VPS4B-201ENST00000238497 TERF2IPQ9NYB0 399 aa11.63□□□□□ -0.55
VPS4B-201ENST00000238497 ZRANB1Q9UGI0 708 aa11.63□□□□□ -0.55
VPS4B-201ENST00000238497 QRICH2Q9H0J4 1663 aa11.63□□□□□ -0.55
VPS4B-201ENST00000238497 TMF1P82094 1093 aa11.62□□□□□ -0.55
VPS4B-201ENST00000238497 RALGAPBQ86X10 1494 aa11.62□□□□□ -0.55
VPS4B-201ENST00000238497 KRT27Q7Z3Y8 459 aa11.62□□□□□ -0.55
VPS4B-201ENST00000238497 NME9Q86XW9 330 aa11.62□□□□□ -0.55
VPS4B-201ENST00000238497 SLIT2O94813 1529 aa11.61□□□□□ -0.55
VPS4B-201ENST00000238497 LARP1Q6PKG0 1096 aaKnown RBP11.61□□□□□ -0.55
VPS4B-201ENST00000238497 COL22A1Q8NFW1 1626 aaPredicted RBP11.61□□□□□ -0.55
VPS4B-201ENST00000238497 USP6P35125 1406 aa11.61□□□□□ -0.55
VPS4B-201ENST00000238497 TOM1L2Q6ZVM7 507 aa11.61□□□□□ -0.55
VPS4B-201ENST00000238497 EP400Q96L91 3159 aa11.6□□□□□ -0.55
VPS4B-201ENST00000238497 SRCAPQ6ZRS2 3230 aa11.6□□□□□ -0.55
VPS4B-201ENST00000238497 PDE3BQ13370 1112 aa11.6□□□□□ -0.55
VPS4B-201ENST00000238497 ITSN1Q15811 1721 aa11.6□□□□□ -0.55
VPS4B-201ENST00000238497 CDK12Q9NYV4 1490 aaPredicted RBP11.58□□□□□ -0.55
VPS4B-201ENST00000238497 LTV1Q96GA3 475 aaPredicted RBP11.58□□□□□ -0.55
VPS4B-201ENST00000238497 SLC24A1O60721 1099 aa11.58□□□□□ -0.56
VPS4B-201ENST00000238497 TESK2Q96S53 571 aa11.58□□□□□ -0.56
VPS4B-201ENST00000238497 DEFB132Q7Z7B7 95 aa11.58□□□□□ -0.56
VPS4B-201ENST00000238497 KCNH5Q8NCM2 988 aa11.58□□□□□ -0.56
VPS4B-201ENST00000238497 SPATA31A5Q5VU36 1347 aa11.58□□□□□ -0.56
VPS4B-201ENST00000238497 SPATA31A7Q8IWB4 1347 aa11.58□□□□□ -0.56
VPS4B-201ENST00000238497 CDCA8Q53HL2 280 aa11.57□□□□□ -0.56
VPS4B-201ENST00000238497 TTC21AQ8NDW8 1320 aa11.57□□□□□ -0.56
VPS4B-201ENST00000238497 TRPM3Q9HCF6 1732 aaPredicted RBP11.56□□□□□ -0.56
VPS4B-201ENST00000238497 TCP11L2Q8N4U5 519 aa11.56□□□□□ -0.56
VPS4B-201ENST00000238497 NLRP2Q9NX02 1062 aa11.56□□□□□ -0.56
VPS4B-201ENST00000238497 USP19O94966 1318 aa11.56□□□□□ -0.56
VPS4B-201ENST00000238497 SBNO2Q9Y2G9 1366 aa11.56□□□□□ -0.56
VPS4B-201ENST00000238497 TNNT2P45379 298 aaPredicted RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms