RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 FanciQ8K368 1330 aa21.31■■□□□ 1
Ctcf-201ENSMUST00000005841 Erbb4Q61527 1308 aa21.31■■□□□ 1
Ctcf-201ENSMUST00000005841 Cald1E9QA15 768 aaKnown RBP21.31■■□□□ 1
Ctcf-201ENSMUST00000005841 Gtf2e1Q9D0D5 440 aa21.31■■□□□ 1
Ctcf-201ENSMUST00000005841 Usp40Q8BWR4 1235 aa21.3■■□□□ 1
Ctcf-201ENSMUST00000005841 GsdmaQ9EST1 446 aa21.3■■□□□ 1
Ctcf-201ENSMUST00000005841 Znf518aB2RRF6 1478 aaKnown RBP21.3■■□□□ 1
Ctcf-201ENSMUST00000005841 Pik3r4Q8VD65 1358 aa21.3■■□□□ 1
Ctcf-201ENSMUST00000005841 Rrp12Q6P5B0 1295 aaKnown RBP21.29■■□□□ 1
Ctcf-201ENSMUST00000005841 Kif18aQ91WD7 886 aa21.29■■□□□ 1
Ctcf-201ENSMUST00000005841 Atp7bQ64446 1462 aa21.29■■□□□ 1
Ctcf-201ENSMUST00000005841 Ttc21bQ0HA38 1315 aa21.27■■□□□ 1
Ctcf-201ENSMUST00000005841 PalldQ9ET54 1408 aa21.27■■□□□ 1
Ctcf-201ENSMUST00000005841 Zbtb7cQ8VCZ7 619 aa21.27■■□□□ 1
Ctcf-201ENSMUST00000005841 CastP51125 788 aa21.26■□□□□ 0.99
Ctcf-201ENSMUST00000005841 EngaseQ8BX80 734 aa21.26■□□□□ 0.99
Ctcf-201ENSMUST00000005841 Mknk2Q8CDB0 459 aa21.26■□□□□ 0.99
Ctcf-201ENSMUST00000005841 Nlrp6Q91WS2 869 aa21.26■□□□□ 0.99
Ctcf-201ENSMUST00000005841 Armcx1Q9CX83 456 aa21.26■□□□□ 0.99
Ctcf-201ENSMUST00000005841 Ankrd50F7BE84 1390 aa21.25■□□□□ 0.99
Ctcf-201ENSMUST00000005841 Mfap1aC0HKD8 439 aaKnown RBP21.24■□□□□ 0.99
Ctcf-201ENSMUST00000005841 Mfap1bC0HKD9 439 aaKnown RBP21.24■□□□□ 0.99
Ctcf-201ENSMUST00000005841 Kdm2aP59997 1161 aa21.24■□□□□ 0.99
Ctcf-201ENSMUST00000005841 Tpm2P58774 284 aa21.24■□□□□ 0.99
Ctcf-201ENSMUST00000005841 Tmx3Q8BXZ1 456 aa21.24■□□□□ 0.99
Ctcf-201ENSMUST00000005841 Tet3Q8BG87 1668 aa21.23■□□□□ 0.99
Ctcf-201ENSMUST00000005841 Irf5P56477 497 aa21.23■□□□□ 0.99
Ctcf-201ENSMUST00000005841 Atp10dQ8K2X1 1416 aa21.23■□□□□ 0.99
Ctcf-201ENSMUST00000005841 Ccar1Q8CH18 1146 aaKnown RBP21.22■□□□□ 0.99
Ctcf-201ENSMUST00000005841 Knl1Q66JQ7 1612 aa21.22■□□□□ 0.99
Ctcf-201ENSMUST00000005841 ScaperF8VQ70 1398 aaKnown RBP21.22■□□□□ 0.99
Ctcf-201ENSMUST00000005841 Kif20bQ80WE4 1774 aaKnown RBP21.22■□□□□ 0.99
Ctcf-201ENSMUST00000005841 Apaf1O88879 1249 aa21.2■□□□□ 0.98
Ctcf-201ENSMUST00000005841 Pdcl2Q78Y63 240 aa21.2■□□□□ 0.98
Ctcf-201ENSMUST00000005841 Dusp27Q148W8 1138 aa21.2■□□□□ 0.98
Ctcf-201ENSMUST00000005841 Ksr2Q3UVC0 959 aa21.2■□□□□ 0.98
Ctcf-201ENSMUST00000005841 Dmrtc1Q9D9R7 182 aa21.2■□□□□ 0.98
Ctcf-201ENSMUST00000005841 SkilQ60665 675 aa21.19■□□□□ 0.98
Ctcf-201ENSMUST00000005841 Cog6Q8R3I3 657 aa21.19■□□□□ 0.98
Ctcf-201ENSMUST00000005841 Gm20521D3Z5F7 333 aa21.19■□□□□ 0.98
Ctcf-201ENSMUST00000005841 Lrrc7Q80TE7 1490 aa21.19■□□□□ 0.98
Ctcf-201ENSMUST00000005841 Cdk12Q14AX6 1484 aaKnown RBP21.18■□□□□ 0.98
Ctcf-201ENSMUST00000005841 Rsph3aQ3UFY4 516 aa21.18■□□□□ 0.98
Ctcf-201ENSMUST00000005841 Fgd6Q69ZL1 1399 aa21.18■□□□□ 0.98
Ctcf-201ENSMUST00000005841 Maco1Q7TQE6 664 aaKnown RBP21.18■□□□□ 0.98
Ctcf-201ENSMUST00000005841 LifrP42703 1092 aa21.17■□□□□ 0.98
Ctcf-201ENSMUST00000005841 Pnma3Q8JZW8 466 aa21.17■□□□□ 0.98
Ctcf-201ENSMUST00000005841 PplQ9R269 1755 aa21.17■□□□□ 0.98
Ctcf-201ENSMUST00000005841 AU022751B1B0V2 589 aa21.17■□□□□ 0.98
Ctcf-201ENSMUST00000005841 Wwc1Q5SXA9 1104 aa21.17■□□□□ 0.98
Ctcf-201ENSMUST00000005841 Spef2Q8C9J3 1734 aa21.17■□□□□ 0.98
Ctcf-201ENSMUST00000005841 PaskQ8CEE6 1383 aa21.17■□□□□ 0.98
Ctcf-201ENSMUST00000005841 ArxO35085 564 aa21.16■□□□□ 0.98
Ctcf-201ENSMUST00000005841 Map7O88735 730 aa21.16■□□□□ 0.98
Ctcf-201ENSMUST00000005841 Ddrgk1Q80WW9 315 aa21.16■□□□□ 0.98
Ctcf-201ENSMUST00000005841 Fan1Q69ZT1 1020 aa21.15■□□□□ 0.98
Ctcf-201ENSMUST00000005841 Wdr63B2RY71 923 aa21.14■□□□□ 0.98
Ctcf-201ENSMUST00000005841 Arhgef28P97433 1693 aa21.14■□□□□ 0.97
Ctcf-201ENSMUST00000005841 NktrP30415 1453 aa21.14■□□□□ 0.97
Ctcf-201ENSMUST00000005841 Bloc1s4Q8VED2 215 aa21.13■□□□□ 0.97
Ctcf-201ENSMUST00000005841 Rnf123Q5XPI3 1314 aa21.13■□□□□ 0.97
Ctcf-201ENSMUST00000005841 Cluap1Q8R3P7 413 aa21.12■□□□□ 0.97
Ctcf-201ENSMUST00000005841 Q4VA45 678 aa21.11■□□□□ 0.97
Ctcf-201ENSMUST00000005841 Gse1Q3U3C9 1213 aa21.11■□□□□ 0.97
Ctcf-201ENSMUST00000005841 E4f1Q8CCE9 783 aa21.11■□□□□ 0.97
Ctcf-201ENSMUST00000005841 Puf60Q3UEB3 564 aaKnown RBP21.1■□□□□ 0.97
Ctcf-201ENSMUST00000005841 Tbc1d9Q3UYK3 1264 aa21.1■□□□□ 0.97
Ctcf-201ENSMUST00000005841 Bag4Q8CI61 457 aa21.1■□□□□ 0.97
Ctcf-201ENSMUST00000005841 AdgbG3UZ78 1657 aa21.09■□□□□ 0.97
Ctcf-201ENSMUST00000005841 Adgrb1Q3UHD1 1582 aa21.09■□□□□ 0.97
Ctcf-201ENSMUST00000005841 Ccdc171E9Q1U1 1324 aa21.09■□□□□ 0.97
Ctcf-201ENSMUST00000005841 Aplp1Q03157 653 aa21.09■□□□□ 0.97
Ctcf-201ENSMUST00000005841 Taok2Q6ZQ29 1240 aa21.09■□□□□ 0.97
Ctcf-201ENSMUST00000005841 Ciz1Q8VEH2 845 aa21.09■□□□□ 0.97
Ctcf-201ENSMUST00000005841 Synj2Q9D2G5 1434 aa21.08■□□□□ 0.97
Ctcf-201ENSMUST00000005841 Nsd3Q6P2L6 1439 aa21.08■□□□□ 0.96
Ctcf-201ENSMUST00000005841 Rfx1P48377 963 aa21.08■□□□□ 0.96
Ctcf-201ENSMUST00000005841 Abca14E9Q8F8 1683 aa21.07■□□□□ 0.96
Ctcf-201ENSMUST00000005841 Gm9992B2RWK3 458 aa21.07■□□□□ 0.96
Ctcf-201ENSMUST00000005841 Unc93aQ710D3 458 aa21.07■□□□□ 0.96
Ctcf-201ENSMUST00000005841 Tfip11Q9ERA6 838 aaKnown RBP21.07■□□□□ 0.96
Ctcf-201ENSMUST00000005841 Zdhhc9P59268 364 aa21.06■□□□□ 0.96
Ctcf-201ENSMUST00000005841 Tbc1d30Q69ZT9 766 aa21.06■□□□□ 0.96
Ctcf-201ENSMUST00000005841 Adamts7Q68SA9 1657 aa21.06■□□□□ 0.96
Ctcf-201ENSMUST00000005841 SlkO54988 1233 aa21.06■□□□□ 0.96
Ctcf-201ENSMUST00000005841 Kif13aQ9EQW7 1749 aa21.05■□□□□ 0.96
Ctcf-201ENSMUST00000005841 Q3UPC7 1272 aa21.05■□□□□ 0.96
Ctcf-201ENSMUST00000005841 Dnajc5bQ9CQ94 199 aa21.05■□□□□ 0.96
Ctcf-201ENSMUST00000005841 Srpk2O54781 681 aaKnown RBP21.04■□□□□ 0.96
Ctcf-201ENSMUST00000005841 Fkbp15Q6P9Q6 1216 aaKnown RBP21.04■□□□□ 0.96
Ctcf-201ENSMUST00000005841 Arhgap23Q69ZH9 1483 aa21.04■□□□□ 0.96
Ctcf-201ENSMUST00000005841 Plcb2A3KGF7 1181 aa21.04■□□□□ 0.96
Ctcf-201ENSMUST00000005841 ImpactO55091 318 aa21.04■□□□□ 0.96
Ctcf-201ENSMUST00000005841 Tsen2Q6P7W5 460 aa21.04■□□□□ 0.96
Ctcf-201ENSMUST00000005841 Cetn4Q8K4K1 168 aa21.04■□□□□ 0.96
Ctcf-201ENSMUST00000005841 CenppQ9CZ92 286 aa21.04■□□□□ 0.96
Ctcf-201ENSMUST00000005841 Lekr1B2RVN1 116 aa21.02■□□□□ 0.96
Ctcf-201ENSMUST00000005841 KnstrnQ9D9Z1 312 aaKnown RBP21.01■□□□□ 0.95
Ctcf-201ENSMUST00000005841 Pdia4P08003 638 aaKnown RBP21■□□□□ 0.95
Ctcf-201ENSMUST00000005841 Aldh1l1Q8R0Y6 902 aa21■□□□□ 0.95
Retrieved 100 of 22,080 RNA–protein pairs in 21 ms