RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 PSEN1P49768 467 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 PFKPQ01813 784 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 SDHAF4Q5VUM1 108 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 CDK20Q8IZL9 346 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 CCT7Q99832 543 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 ADGRB1O14514 1584 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 BTN3A1O00481 513 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 PSMD10O75832 226 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 CRABP2P29373 138 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 CRY1Q16526 586 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 CES3Q6UWW8 571 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 LRRC8DQ7L1W4 858 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 FAM124AQ86V42 546 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 KLRG1Q96E93 195 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 FAM120BQ96EK7 910 aaKnown RBP11.6□□□□□ -0.55
CLIP1-219ENST00000620786 CPNE1Q99829 537 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 CDC42EP4Q9H3Q1 356 aaKnown RBP11.6□□□□□ -0.55
CLIP1-219ENST00000620786 SPATA31C2B4DYI2 1134 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 BAIAP3O94812 1187 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 NEK2P51955 445 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 ZNF135P52742 658 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-219ENST00000620786 CHRNB3Q05901 458 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 USP39Q53GS9 565 aaKnown RBP11.6□□□□□ -0.55
CLIP1-219ENST00000620786 HOMEZQ8IX15 550 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 COLGALT2Q8IYK4 626 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 HJURPQ8NCD3 748 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-219ENST00000620786 PPTC7Q8NI37 304 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 EXO5Q9H790 373 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 KLC4Q9NSK0 619 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 OR12D3Q9UGF7 316 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 SLCO1B7G3V0H7 640 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 FGBP02675 491 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 CBWD6Q4V339 395 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 FAM183BPQ6ZVS7 135 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 MILR1Q7Z6M3 343 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 KIF2BQ8N4N8 673 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 ELMO1Q92556 727 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 SH3GL1Q99961 368 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 BBS2Q9BXC9 721 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.6□□□□□ -0.555e-9■■■■□ 19.5
CLIP1-219ENST00000620786 MMP3P08254 477 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 SERPINH1P50454 418 aaKnown RBP11.59□□□□□ -0.55
CLIP1-219ENST00000620786 ILF2Q12905 390 aaKnown RBP11.59□□□□□ -0.55
CLIP1-219ENST00000620786 CAPSQ13938 189 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 PPP1R14AQ96A00 147 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 MTFMTQ96DP5 389 aaKnown RBP11.59□□□□□ -0.55
CLIP1-219ENST00000620786 MAGEB18Q96M61 343 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 PIF1Q9H611 641 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 EFCAB1Q9HAE3 211 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 SYBUQ9NX95 663 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 PCDHA3Q9Y5H8 950 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 BTBD19C9JJ37 291 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 E9PBE3 544 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 SEC22BO75396 215 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 FGF19O95750 216 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 ADH1CP00326 375 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 ZNF23P17027 643 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 LAG3P18627 525 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 ANGPT1Q15389 498 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 DAB2IPQ5VWQ8 1189 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 FAM180AQ6UWF9 173 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 SLAIN1Q8ND83 568 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 KCTD14Q9BQ13 255 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-219ENST00000620786 YIPF3Q9GZM5 350 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 CDT1Q9H211 546 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 ATP13A3Q9H7F0 1226 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 KLHL41O60662 606 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 TRUB2O95900 331 aaKnown RBP11.59□□□□□ -0.55
CLIP1-219ENST00000620786 SELPP16109 830 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 TNFSF9P41273 254 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 CD86P42081 329 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 KCNT2Q6UVM3 1135 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 IFNLR1Q8IU57 520 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-219ENST00000620786 TEX9Q8N6V9 391 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 VGLL2Q8N8G2 317 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 OR56A4Q8NGH8 313 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 GPR152Q8TDT2 470 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 MRPL48Q96GC5 212 aaKnown RBP11.59□□□□□ -0.55
CLIP1-219ENST00000620786 PTPRHQ9HD43 1115 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 ARHGAP20Q9P2F6 1191 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 HEY2Q9UBP5 337 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 KLHL20Q9Y2M5 609 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 CRYL1Q9Y2S2 319 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 PCDHGA4Q9Y5G9 962 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 SH3BGRLO75368 114 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 BGNP21810 368 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 LSP1P33241 339 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 CLK1P49759 484 aaKnown RBP11.59□□□□□ -0.55
CLIP1-219ENST00000620786 DLG4P78352 724 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 ACAP1Q15027 740 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 DDR2Q16832 855 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 C1orf186Q6ZWK4 172 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 SLC4A9Q96Q91 983 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 SYT17Q9BSW7 474 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 ANKRD6Q9Y2G4 727 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 GJB1P08034 283 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 PAX3P23760 479 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 TARSP26639 723 aaKnown RBP11.59□□□□□ -0.55
CLIP1-219ENST00000620786 ZNF697Q5TEC3 545 aa11.59□□□□□ -0.55
CLIP1-219ENST00000620786 PTF1AQ7RTS3 328 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms