RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 PEX6Q13608 980 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 PCLAFQ15004 111 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 MOGQ16653 247 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 RGS21Q2M5E4 152 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 MGAT5BQ3V5L5 792 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 CYS1Q717R9 158 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 ADAMTS16Q8TE57 1224 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 FNIP1Q8TF40 1166 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 SREK1Q8WXA9 508 aaKnown RBP11.07□□□□□ -0.64
UPF3A-212ENST00000619079 ZNF606Q8WXB4 792 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 LENG8Q96PV6 779 aaPredicted RBP11.07□□□□□ -0.64
UPF3A-212ENST00000619079 MMP19Q99542 508 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 OLFM1Q99784 485 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 TMEM79Q9BSE2 394 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 XPNPEP1Q9NQW7 623 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 RAB6BQ9NRW1 208 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 OLAHQ9NV23 265 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 FBXO28Q9NVF7 368 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 DOLKQ9UPQ8 538 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 B3GNT3Q9Y2A9 372 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 HMX2A2RU54 273 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 SLC15A5A6NIM6 579 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 NOP56O00567 594 aaKnown RBP11.07□□□□□ -0.64
UPF3A-212ENST00000619079 HNRNPDLO14979 420 aaKnown RBP11.07□□□□□ -0.64
UPF3A-212ENST00000619079 ZBTB14O43829 449 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 ZBTB11O95625 1053 aaPredicted RBP11.07□□□□□ -0.64
UPF3A-212ENST00000619079 RALBP11234 206 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 TNNI1P19237 187 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 NPTX2P47972 431 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 IKBKEQ14164 716 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 RFTN1Q14699 578 aaPredicted RBP11.07□□□□□ -0.64
UPF3A-212ENST00000619079 NOMO1Q15155 1222 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 ANKDD1AQ495B1 522 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 FAM102BQ5T8I3 360 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 THOC7Q6I9Y2 204 aaKnown RBP11.07□□□□□ -0.64
UPF3A-212ENST00000619079 C4orf22Q6V702 233 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 UNC5AQ6ZN44 842 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 CATSPERGQ6ZRH7 1159 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 ZNF354CQ86Y25 554 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 DNAJC5GQ8N7S2 189 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 KCTD6Q8NC69 237 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 MCUQ8NE86 351 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 TOP1MTQ969P6 601 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 FAM213AQ9BRX8 229 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 UNKQ9C0B0 810 aaKnown RBP11.07□□□□□ -0.64
UPF3A-212ENST00000619079 KMT5AQ9NQR1 393 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 SMYD2Q9NRG4 433 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 TBC1D22BQ9NU19 505 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 ATAD3AQ9NVI7 634 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 GIN1Q9NXP7 522 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 PCDHB12Q9Y5F1 795 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 HEY1Q9Y5J3 304 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 PHIPQ8WWQ0 1821 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 K7EPI3 171 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 CNOT3O75175 753 aaKnown RBP11.06□□□□□ -0.64
UPF3A-212ENST00000619079 GSTT2P0CG29 244 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 GSTT2BP0CG30 244 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 EIF2AK2P19525 551 aaKnown RBP11.06□□□□□ -0.64
UPF3A-212ENST00000619079 GLDCP23378 1020 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 PIK3R1P27986 724 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 HK2P52789 917 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 TFDP2Q14188 446 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 HERC3Q15034 1050 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 SMTNL2Q2TAL5 461 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 FAM47CQ5HY64 1035 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 FIBCD1Q8N539 461 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 CHURC1Q8WUH1 139 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 ZNF512Q96ME7 567 aaPredicted RBP11.06□□□□□ -0.64
UPF3A-212ENST00000619079 DOK1Q99704 481 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 DCUN1D5Q9BTE7 237 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 CDH19Q9H159 772 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 COG4Q9H9E3 785 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 ZFYVE28Q9HCC9 887 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 TCF7L2Q9NQB0 619 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 EBF1Q9UH73 591 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 IPO11Q9UI26 975 aaKnown RBP11.06□□□□□ -0.64
UPF3A-212ENST00000619079 FEM1BQ9UK73 627 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 EMCNQ9ULC0 261 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 GIPC1O14908 333 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 EXTL3O43909 919 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 UGT1A9O60656 530 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 KLHL41O60662 606 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 NOL3O60936 208 aaKnown RBP11.06□□□□□ -0.64
UPF3A-212ENST00000619079 H2AFYO75367 372 aaKnown RBP11.06□□□□□ -0.64
UPF3A-212ENST00000619079 LRCH4O75427 683 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 STAMBPO95630 424 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 C4BPAP04003 597 aaKnown RBP11.06□□□□□ -0.64
UPF3A-212ENST00000619079 FUCA1P04066 466 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 TFPTP0C1Z6 253 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 POLR2BP30876 1174 aaKnown RBP11.06□□□□□ -0.64
UPF3A-212ENST00000619079 EIF2B2P49770 351 aaKnown RBP11.06□□□□□ -0.64
UPF3A-212ENST00000619079 INAQ16352 499 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 NRF1Q16656 503 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 VWA5B1Q5TIE3 1220 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 TDRD10Q5VZ19 366 aaKnown RBP11.06□□□□□ -0.64
UPF3A-212ENST00000619079 SNX32Q86XE0 403 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 TBC1D15Q8TC07 691 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 STON2Q8WXE9 905 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 ZNF516Q92618 1163 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 RTP4Q96DX8 246 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms