RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 LMLNQ96KR4 655 aa20.3■□□□□ 0.84
UPF3A-211ENST00000618700 RETREG1Q9H6L5 497 aa20.3■□□□□ 0.84
UPF3A-211ENST00000618700 DNAJC17Q9NVM6 304 aaKnown RBP20.3■□□□□ 0.84
UPF3A-211ENST00000618700 TRMT1Q9NXH9 659 aaKnown RBP20.3■□□□□ 0.84
UPF3A-211ENST00000618700 CWC15Q9P013 229 aaKnown RBP20.3■□□□□ 0.84
UPF3A-211ENST00000618700 RCOR3Q9P2K3 495 aaPredicted RBP20.3■□□□□ 0.84
UPF3A-211ENST00000618700 EEF2KO00418 725 aaKnown RBP20.29■□□□□ 0.84
UPF3A-211ENST00000618700 FGF10O15520 208 aaPredicted RBP20.29■□□□□ 0.84
UPF3A-211ENST00000618700 CD48P09326 243 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 GOT1P17174 413 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 EPHB2P29323 1055 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 SLC6A11P48066 632 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 HCAR3P49019 387 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 CDH6P55285 790 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 STARD6P59095 220 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 TPI1P60174 286 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 SIGLEC14Q08ET2 396 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 MESP2Q0VG99 397 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 DPYSQ14117 519 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 DPYSL3Q14195 570 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 PDK2Q15119 407 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 CXorf57Q6NSI4 855 aaKnown RBP20.29■□□□□ 0.84
UPF3A-211ENST00000618700 RWDD4Q6NW29 188 aaKnown RBP20.29■□□□□ 0.84
UPF3A-211ENST00000618700 RFX8Q6ZV50 586 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 VSIG1Q86XK7 387 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 MFN1Q8IWA4 741 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 SIX5Q8N196 739 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 DDX51Q8N8A6 666 aaKnown RBP eCLIP20.29■□□□□ 0.84
UPF3A-211ENST00000618700 ZNF557Q8N988 423 aaPredicted RBP20.29■□□□□ 0.84
UPF3A-211ENST00000618700 TRIM58Q8NG06 486 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 FIBINQ8TAL6 211 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 RAPGEF5Q92565 580 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 CSPG4P5Q96PW8 444 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 ALS2CR12Q96Q35 445 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 ZNF670Q9BS34 389 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 KLHL11Q9NVR0 708 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 TMEM248Q9NWD8 314 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 DDX56Q9NY93 547 aaKnown RBP20.29■□□□□ 0.84
UPF3A-211ENST00000618700 AMFRQ9UKV5 643 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 SLC27A6Q9Y2P4 619 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 PCDHA3Q9Y5H8 950 aa20.29■□□□□ 0.84
UPF3A-211ENST00000618700 GOLGA6L9A6NEM1 432 aa20.28■□□□□ 0.84
UPF3A-211ENST00000618700 C3orf70A6NLC5 250 aaPredicted RBP20.28■□□□□ 0.84
UPF3A-211ENST00000618700 WASH4PA8MWX3 477 aa20.28■□□□□ 0.84
UPF3A-211ENST00000618700 PI4K2BG5E9Z4 385 aa20.28■□□□□ 0.84
UPF3A-211ENST00000618700 H3BRJ5 948 aa20.28■□□□□ 0.84
UPF3A-211ENST00000618700 MAN2B1O00754 1011 aa20.28■□□□□ 0.84
UPF3A-211ENST00000618700 TRIM24O15164 1050 aa20.28■□□□□ 0.84
UPF3A-211ENST00000618700 KRT1P04264 644 aa20.28■□□□□ 0.84
UPF3A-211ENST00000618700 TNNT1P13805 278 aa20.28■□□□□ 0.84
UPF3A-211ENST00000618700 IL4RP24394 825 aa20.28■□□□□ 0.84
UPF3A-211ENST00000618700 HLA-FP30511 346 aa20.28■□□□□ 0.84
UPF3A-211ENST00000618700 DGKGP49619 791 aa20.28■□□□□ 0.84
UPF3A-211ENST00000618700 CDH18Q13634 790 aa20.28■□□□□ 0.84
UPF3A-211ENST00000618700 KRT81Q14533 505 aa20.28■□□□□ 0.84
UPF3A-211ENST00000618700 FSCBQ5H9T9 825 aa20.28■□□□□ 0.84
UPF3A-211ENST00000618700 PEX26Q7Z412 305 aa20.28■□□□□ 0.84
UPF3A-211ENST00000618700 SUGP1Q8IWZ8 645 aaKnown RBP20.28■□□□□ 0.84
UPF3A-211ENST00000618700 KATNAL2Q8IYT4 538 aa20.28■□□□□ 0.84
UPF3A-211ENST00000618700 CARNMT1Q8N4J0 409 aa20.28■□□□□ 0.84
UPF3A-211ENST00000618700 FAF2Q96CS3 445 aa20.28■□□□□ 0.84
UPF3A-211ENST00000618700 P2RY13Q9BPV8 354 aa20.28■□□□□ 0.84
UPF3A-211ENST00000618700 DEC1Q9P2X7 70 aa20.28■□□□□ 0.84
UPF3A-211ENST00000618700 TBC1D30Q9Y2I9 924 aa20.28■□□□□ 0.84
UPF3A-211ENST00000618700 MIA3Q5JRA6 1907 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 CCDC66A2RUB6 948 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 MIF4GDA9UHW6 222 aaKnown RBP20.27■□□□□ 0.84
UPF3A-211ENST00000618700 ZNF487B1APH4 448 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 H0Y626 953 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 ALADP13716 330 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 KDELR1P24390 212 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 ARL4AP40617 200 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 PEX5P50542 639 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 GALK1P51570 392 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 TMEM196Q5HYL7 178 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 GRAMD4Q6IC98 578 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 ZNF852Q6ZMS4 543 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 TFAP2DQ7Z6R9 452 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 KIAA0907Q7Z7F0 614 aaPredicted RBP20.27■□□□□ 0.84
UPF3A-211ENST00000618700 ZNF687Q8N1G0 1237 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 RTL3Q8N8U3 475 aaKnown RBP20.27■□□□□ 0.84
UPF3A-211ENST00000618700 TERB1Q8NA31 727 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 KCTD6Q8NC69 237 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 OR52K2Q8NGK3 314 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 UBE2Q2Q8WVN8 375 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 FAM3CQ92520 227 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 HES6Q96HZ4 224 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 SHDQ96IW2 340 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 PNKPQ96T60 521 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 EPHX3Q9H6B9 360 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 CATSPERBQ9H7T0 1116 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 FBRSL1Q9HCM7 1045 aaKnown RBP20.27■□□□□ 0.84
UPF3A-211ENST00000618700 ARHGEF4Q9NR80 690 aa20.27■□□□□ 0.84
UPF3A-211ENST00000618700 PACSIN2Q9UNF0 486 aaPredicted RBP20.27■□□□□ 0.84
UPF3A-211ENST00000618700 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.27■□□□□ 0.84
UPF3A-211ENST00000618700 TECTAO75443 2155 aa20.27■□□□□ 0.83
UPF3A-211ENST00000618700 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20.26■□□□□ 0.83
UPF3A-211ENST00000618700 LRRD1A4D1F6 860 aa20.26■□□□□ 0.83
UPF3A-211ENST00000618700 DDX3YO15523 660 aaKnown RBP20.26■□□□□ 0.83
UPF3A-211ENST00000618700 MAPKAPK2P49137 400 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms