RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 TNFAIP3P21580 790 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 RRM1P23921 792 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 HNRNPH3P31942 346 aaKnown RBP16.64■□□□□ 0.25
TRIM28-213ENST00000598355 CSKP41240 450 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 COPAP53621 1224 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 ATP11AP98196 1134 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 USP39Q53GS9 565 aaKnown RBP16.64■□□□□ 0.25
TRIM28-213ENST00000598355 PITRM1Q5JRX3 1037 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 SH3PXD2AQ5TCZ1 1133 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 PLEKHA7Q6IQ23 1121 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 DNAJC24Q6P3W2 148 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 WDR59Q6PJI9 974 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 CEP68Q76N32 757 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 METTL3Q86U44 580 aaKnown RBP16.64■□□□□ 0.25
TRIM28-213ENST00000598355 FAM131BQ86XD5 332 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 OR52K2Q8NGK3 314 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 CYB5D2Q8WUJ1 264 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 NTAN1Q96AB6 310 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 ALG14Q96F25 216 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 MRGPRX3Q96LB0 322 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 RPRD1AQ96P16 312 aaPredicted RBP16.64■□□□□ 0.25
TRIM28-213ENST00000598355 SELENOOQ9BVL4 669 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 MKRN2Q9H000 416 aaKnown RBP16.64■□□□□ 0.25
TRIM28-213ENST00000598355 TMPRSS4Q9NRS4 437 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 KIAA1522Q9P206 1035 aaPredicted RBP16.64■□□□□ 0.25
TRIM28-213ENST00000598355 NCDNQ9UBB6 729 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 NEU3Q9UQ49 428 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 TBC1D30Q9Y2I9 924 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 OR51B4Q9Y5P0 310 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 CACNA1EQ15878 2313 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 LAMA1P25391 3075 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 DRGXA6NNA5 263 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 H0Y626 953 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 DCLK1O15075 740 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 CLDN11O75508 207 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 TPM3P06753 285 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 POLR2EP19388 210 aaKnown RBP16.63■□□□□ 0.25
TRIM28-213ENST00000598355 GPD1P21695 349 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 BCKDHBP21953 392 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 VASPP50552 380 aaPredicted RBP16.63■□□□□ 0.25
TRIM28-213ENST00000598355 ZNF143P52747 638 aaPredicted RBP16.63■□□□□ 0.25
TRIM28-213ENST00000598355 CDH4P55283 916 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 OXCT1P55809 520 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 RPL7AP62424 266 aaKnown RBP16.63■□□□□ 0.25
TRIM28-213ENST00000598355 SCAPQ12770 1279 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 STARD3Q14849 445 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 LPAL2Q16609 132 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 SERPINA13PQ6UXR4 307 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.63■□□□□ 0.25
TRIM28-213ENST00000598355 PHLDB2Q86SQ0 1253 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 DCLK2Q8N568 766 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 MCEEQ96PE7 176 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 ISCUQ9H1K1 167 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 FBRSQ9HAH7 460 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 USP36Q9P275 1121 aaKnown RBP16.63■□□□□ 0.25
TRIM28-213ENST00000598355 GMEB2Q9UKD1 530 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 PCDHGA5Q9Y5G8 931 aa16.63■□□□□ 0.25
TRIM28-213ENST00000598355 BZW2Q9Y6E2 419 aaKnown RBP16.63■□□□□ 0.25
TRIM28-213ENST00000598355 E9PAM4 449 aa16.62■□□□□ 0.25
TRIM28-213ENST00000598355 CCP110O43303 1012 aa16.62■□□□□ 0.25
TRIM28-213ENST00000598355 IGLV3-19P01714 112 aa16.62■□□□□ 0.25
TRIM28-213ENST00000598355 SRPRAP08240 638 aaKnown RBP16.62■□□□□ 0.25
TRIM28-213ENST00000598355 ADRA1BP35368 520 aa16.62■□□□□ 0.25
TRIM28-213ENST00000598355 MAMLD1Q13495 774 aa16.62■□□□□ 0.25
TRIM28-213ENST00000598355 CDO1Q16878 200 aa16.62■□□□□ 0.25
TRIM28-213ENST00000598355 ALFQ53S48 1182 aa16.62■□□□□ 0.25
TRIM28-213ENST00000598355 CCDC117Q8IWD4 279 aaPredicted RBP16.62■□□□□ 0.25
TRIM28-213ENST00000598355 APCDD1Q8J025 514 aa16.62■□□□□ 0.25
TRIM28-213ENST00000598355 FAM172AQ8WUF8 416 aa16.62■□□□□ 0.25
TRIM28-213ENST00000598355 SPACA7Q96KW9 195 aa16.62■□□□□ 0.25
TRIM28-213ENST00000598355 SIK2Q9H0K1 926 aa16.62■□□□□ 0.25
TRIM28-213ENST00000598355 PARD6AQ9NPB6 346 aa16.62■□□□□ 0.25
TRIM28-213ENST00000598355 BCCIPQ9P287 314 aaKnown RBP eCLIP16.62■□□□□ 0.25
TRIM28-213ENST00000598355 MBD1Q9UIS9 605 aaPredicted RBP16.62■□□□□ 0.25
TRIM28-213ENST00000598355 NENFQ9UMX5 172 aa16.62■□□□□ 0.25
TRIM28-213ENST00000598355 PLA2G4CQ9UP65 541 aa16.62■□□□□ 0.25
TRIM28-213ENST00000598355 LUC7L2Q9Y383 392 aaKnown RBP16.62■□□□□ 0.25
TRIM28-213ENST00000598355 SNX10Q9Y5X0 201 aa16.62■□□□□ 0.25
TRIM28-213ENST00000598355 IGHV1OR15-9A0A0B4J2B8 117 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 CBFA2T2O43439 604 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 RTN2O75298 545 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 ZNF217O75362 1048 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 CNTN5O94779 1100 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 SERPING1P05155 500 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 EPHX1P07099 455 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 SKILP12757 684 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 HLA-EP13747 358 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 MZF1P28698 734 aaPredicted RBP16.61■□□□□ 0.25
TRIM28-213ENST00000598355 OGDHQ02218 1023 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 ZNF252P-AS1Q0IIN9 211 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 BYSLQ13895 437 aaKnown RBP16.61■□□□□ 0.25
TRIM28-213ENST00000598355 TRIM14Q14142 442 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 ELF2Q15723 593 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 FNDC3BQ53EP0 1204 aaKnown RBP16.61■□□□□ 0.25
TRIM28-213ENST00000598355 SPDYCQ5MJ68 293 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 PLA2G2CQ5R387 149 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 SPECC1LQ69YQ0 1117 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 SARM1Q6SZW1 724 aa16.61■□□□□ 0.25
TRIM28-213ENST00000598355 GPR161Q8N6U8 529 aaKnown RBP16.61■□□□□ 0.25
TRIM28-213ENST00000598355 RNF214Q8ND24 703 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms