RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 LENG8Q96PV6 779 aaPredicted RBP15.64■□□□□ 0.09
UPF1-204ENST00000596842 OR52B2Q96RD2 323 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 SMARCAD1Q9H4L7 1026 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 PNPLA8Q9NP80 782 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 SNX15Q9NRS6 342 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 COPG2Q9UBF2 871 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 SNX32Q86XE0 403 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 DEFB106AQ8N104 65 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 SLC2A14Q8TDB8 520 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 MFSD3Q96ES6 412 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 CATSPER2Q96P56 530 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 SSX2IPQ9Y2D8 614 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 CLDN5O00501 218 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 FKBP6O75344 327 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 NELFEP18615 380 aaKnown RBP15.63■□□□□ 0.09
UPF1-204ENST00000596842 CCNIQ14094 377 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 SLC44A4Q53GD3 710 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 SLC9A4Q6AI14 798 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 GRAMD4Q6IC98 578 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 RNF111Q6ZNA4 994 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 SNX31Q8N9S9 440 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 FERMT1Q9BQL6 677 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 ZNF670Q9BS34 389 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 FRMD8Q9BZ67 464 aaPredicted RBP15.63■□□□□ 0.09
UPF1-204ENST00000596842 TASP1Q9H6P5 420 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 CYP3A43Q9HB55 503 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 UBAP1Q9NZ09 502 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 ENDOD1O94919 500 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 MT-CO1P00395 513 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 POLBP06746 335 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 CPOXP36551 454 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 USP46P62068 366 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 LBX2Q6XYB7 198 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 ZSCAN18Q8TBC5 510 aaPredicted RBP15.63■□□□□ 0.09
UPF1-204ENST00000596842 DNAJC1Q96KC8 554 aaKnown RBP15.63■□□□□ 0.09
UPF1-204ENST00000596842 CDRT15Q96T59 188 aa15.63■□□□□ 0.09
UPF1-204ENST00000596842 A0A096LPK6 155 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 RBM47A0AV96 593 aaKnown RBP15.62■□□□□ 0.09
UPF1-204ENST00000596842 STX16-NPEPL1H3BU86 382 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 ZBTB14O43829 449 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 HBP1O60381 514 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 LTFP02788 710 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 VCLP18206 1134 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 MPSTP25325 297 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 GARSP41250 739 aaKnown RBP15.62■□□□□ 0.09
UPF1-204ENST00000596842 CNGA3Q16281 694 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 LIN52Q52LA3 116 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 CCDC92Q53HC0 331 aaPredicted RBP15.62■□□□□ 0.09
UPF1-204ENST00000596842 ARCQ7LC44 396 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 TDRD5Q8NAT2 981 aaKnown RBP15.62■□□□□ 0.09
UPF1-204ENST00000596842 MAPK15Q8TD08 544 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 LRRC39Q96DD0 335 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 COPS7BQ9H9Q2 264 aaPredicted RBP15.62■□□□□ 0.09
UPF1-204ENST00000596842 C20orf96Q9NUD7 363 aaPredicted RBP15.62■□□□□ 0.09
UPF1-204ENST00000596842 DCDC2Q9UHG0 476 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 PPME1Q9Y570 386 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 CSADQ9Y600 493 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 A0A0A0MRY4 1105 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 M0QYT0 321 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 COX4I1P13073 169 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 ITGAXP20702 1163 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 NCBP2-AS2Q69YL0 99 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 RNF135Q8IUD6 432 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 LRGUKQ96M69 825 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 SPATA13Q96N96 652 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 IARS2Q9NSE4 1012 aaKnown RBP15.62■□□□□ 0.09
UPF1-204ENST00000596842 ADAMTS5Q9UNA0 930 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 ARHGAP26Q9UNA1 814 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 DTNAQ9Y4J8 743 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 COL11A1P12107 1806 aaPredicted RBP15.62■□□□□ 0.09
UPF1-204ENST00000596842 TK2O00142 265 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 BIRC5O15392 142 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 PEX1O43933 1283 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 PROZP22891 400 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 TNFAIP2Q03169 654 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 ADIGQ0VDE8 80 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 CERCAMQ5T4B2 595 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 NAPRTQ6XQN6 538 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 OMDQ99983 421 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 SIKE1Q9BRV8 207 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 CACNG4Q9UBN1 327 aa15.62■□□□□ 0.09
UPF1-204ENST00000596842 GABBR2O75899 941 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 PDK3Q15120 406 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 PAOXQ6QHF9 649 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 CATSPER4Q7RTX7 472 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 CERS2Q96G23 380 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 MED10Q9BTT4 135 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 TSPYL2Q9H2G4 693 aaPredicted RBP15.61■□□□□ 0.09
UPF1-204ENST00000596842 NFKBIEO00221 500 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 AOC1P19801 751 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 NDUFV1P49821 464 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 CYTH1Q15438 398 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 MCUQ8NE86 351 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 ACVR1CQ8NER5 493 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 AFG1LQ8WV93 481 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 KHSRPQ92945 711 aaKnown RBP eCLIP15.61■□□□□ 0.09
UPF1-204ENST00000596842 TSNARE1Q96NA8 513 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 SNX25Q9H3E2 840 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 TXNRD2Q9NNW7 524 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 TCF7L2Q9NQB0 619 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms