RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 PITRM1Q5JRX3 1037 aa11.5□□□□□ -0.57
VRK3-210ENST00000596121 ZC3H14Q6PJT7 736 aaKnown RBP11.5□□□□□ -0.57
VRK3-210ENST00000596121 SND1Q7KZF4 910 aaKnown RBP eCLIP11.5□□□□□ -0.57
VRK3-210ENST00000596121 STRADAQ7RTN6 431 aa11.5□□□□□ -0.57
VRK3-210ENST00000596121 AHI1Q8N157 1196 aa11.5□□□□□ -0.57
VRK3-210ENST00000596121 DCLK2Q8N568 766 aa11.5□□□□□ -0.57
VRK3-210ENST00000596121 FAM160A2Q8N612 972 aaPredicted RBP11.5□□□□□ -0.57
VRK3-210ENST00000596121 ZNF366Q8N895 744 aa11.5□□□□□ -0.57
VRK3-210ENST00000596121 WFIKKN2Q8TEU8 576 aa11.5□□□□□ -0.57
VRK3-210ENST00000596121 HMGB4Q8WW32 186 aa11.5□□□□□ -0.57
VRK3-210ENST00000596121 GAB3Q8WWW8 586 aa11.5□□□□□ -0.57
VRK3-210ENST00000596121 RLN3Q8WXF3 142 aa11.5□□□□□ -0.57
VRK3-210ENST00000596121 IQCDQ96DY2 449 aa11.5□□□□□ -0.57
VRK3-210ENST00000596121 HAPLN3Q96S86 360 aa11.5□□□□□ -0.57
VRK3-210ENST00000596121 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.5□□□□□ -0.57
VRK3-210ENST00000596121 CD93Q9NPY3 652 aa11.5□□□□□ -0.57
VRK3-210ENST00000596121 MPP6Q9NZW5 540 aa11.5□□□□□ -0.57
VRK3-210ENST00000596121 CNOT8Q9UFF9 292 aaKnown RBP11.5□□□□□ -0.57
VRK3-210ENST00000596121 NEU3Q9UQ49 428 aa11.5□□□□□ -0.57
VRK3-210ENST00000596121 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.5□□□□□ -0.57
VRK3-210ENST00000596121 OR51B4Q9Y5P0 310 aa11.5□□□□□ -0.57
VRK3-210ENST00000596121 ZNF292O60281 2723 aa11.5□□□□□ -0.57
VRK3-210ENST00000596121 ABCA7Q8IZY2 2146 aa11.5□□□□□ -0.57
VRK3-210ENST00000596121 MUC22E2RYF6 1773 aaPredicted RBP11.49□□□□□ -0.57
VRK3-210ENST00000596121 A0A1B0GVM2 712 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 TCAF2A6NFQ2 919 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 E9PAM4 449 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 H0Y626 953 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 SRGAP2O75044 1071 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 TPM3P06753 285 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 NDUFV2P19404 249 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 BCKDHBP21953 392 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 CDH18Q13634 790 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 SIM2Q14190 667 aaPredicted RBP11.49□□□□□ -0.57
VRK3-210ENST00000596121 MAP7D1Q3KQU3 841 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 PLEKHG6Q3KR16 790 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 RABGAP1LQ5R372 815 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 MANEALQ5VSG8 457 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 DCUN1D2Q6PH85 259 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 TRMT11Q7Z4G4 463 aaKnown RBP11.49□□□□□ -0.57
VRK3-210ENST00000596121 KBTBD6Q86V97 674 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 DRC7Q8IY82 874 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 PYROXD2Q8N2H3 581 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 OR8K1Q8NGG5 319 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 ZNF653Q96CK0 615 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 ARHGEF26Q96DR7 871 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 CHP1Q99653 195 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 CNPY3Q9BT09 278 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 SEMA4AQ9H3S1 761 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 PARVAQ9NVD7 372 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 KIAA1522Q9P206 1035 aaPredicted RBP11.49□□□□□ -0.57
VRK3-210ENST00000596121 SLCO3A1Q9UIG8 710 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 MBD1Q9UIS9 605 aaPredicted RBP11.49□□□□□ -0.57
VRK3-210ENST00000596121 SMG5Q9UPR3 1016 aaKnown RBP11.49□□□□□ -0.57
VRK3-210ENST00000596121 TBC1D30Q9Y2I9 924 aa11.49□□□□□ -0.57
VRK3-210ENST00000596121 BZW2Q9Y6E2 419 aaKnown RBP11.49□□□□□ -0.57
VRK3-210ENST00000596121 MFAP3LO75121 409 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 RPP40O75818 363 aaKnown RBP11.48□□□□□ -0.57
VRK3-210ENST00000596121 DLDP09622 509 aaKnown RBP11.48□□□□□ -0.57
VRK3-210ENST00000596121 POLR2EP19388 210 aaKnown RBP11.48□□□□□ -0.57
VRK3-210ENST00000596121 CNR2P34972 360 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 STK19P49842 368 aaPredicted RBP11.48□□□□□ -0.57
VRK3-210ENST00000596121 PLK1P53350 603 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 COPAP53621 1224 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 CDH4P55283 916 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 GFPT1Q06210 699 aaPredicted RBP11.48□□□□□ -0.57
VRK3-210ENST00000596121 DAB2IPQ5VWQ8 1189 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 SDE2Q6IQ49 451 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 PRR23BQ6ZRT6 265 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 CYP4V2Q6ZWL3 525 aaPredicted RBP11.48□□□□□ -0.57
VRK3-210ENST00000596121 TMC6Q7Z403 805 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 TFAP2DQ7Z6R9 452 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 UCMAQ8WVF2 138 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 NTAN1Q96AB6 310 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 MRGPRX1Q96LB2 322 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 PEBP4Q96S96 227 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 PSMB7Q99436 277 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 FEM1AQ9BSK4 669 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 TRIM5Q9C035 493 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 MKRN2Q9H000 416 aaKnown RBP11.48□□□□□ -0.57
VRK3-210ENST00000596121 THAP2Q9H0W7 228 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 OSBPL2Q9H1P3 480 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 DUSP15Q9H1R2 295 aaPredicted RBP11.48□□□□□ -0.57
VRK3-210ENST00000596121 POLMQ9NP87 494 aaPredicted RBP11.48□□□□□ -0.57
VRK3-210ENST00000596121 PRSS16Q9NQE7 514 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 ABHD10Q9NUJ1 306 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 NDFIP2Q9NV92 336 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 MYO1AQ9UBC5 1043 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 ERVW-1Q9UQF0 538 aa11.48□□□□□ -0.57
VRK3-210ENST00000596121 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.47□□□□□ -0.57
VRK3-210ENST00000596121 A0A0D9SEW6 157 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 TYW5A2RUC4 315 aaKnown RBP11.47□□□□□ -0.57
VRK3-210ENST00000596121 TTC34A8MYJ7 566 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 CLDN11O75508 207 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 EPHX1P07099 455 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 TCF4P15884 667 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 TGM1P22735 817 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 P2RY2P41231 377 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 ZNF75DP51815 510 aa11.47□□□□□ -0.57
VRK3-210ENST00000596121 GALCP54803 685 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms