RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	KLHL29	Q96CT2	875 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	TMEM169	Q96HH4	297 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	QKI	Q96PU8	341 aa	Known RBP eCLIP	15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	TMEM109	Q9BVC6	243 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	CDC42EP4	Q9H3Q1	356 aa	Known RBP	15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	LRRC4C	Q9HCJ2	640 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	USP15	Q9Y4E8	981 aa	Predicted RBP	15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	NUP205	Q92621	2012 aa		15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	CFAP69	A5D8W1	941 aa		15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	KCNN4	O15554	427 aa		15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	ATP5H	O75947	161 aa		15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	ABLIM3	O94929	683 aa		15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	OAS1	P00973	400 aa	Known RBP	15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	ERCC2	P18074	760 aa		15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	TAF10	Q12962	218 aa		15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	SLC45A4	Q5BKX6	768 aa		15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	BRMS1L	Q5PSV4	323 aa		15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	RASIP1	Q5U651	963 aa		15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	ANKRD22	Q5VYY1	191 aa		15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	KIAA1841	Q6NSI8	718 aa		15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	ARHGAP18	Q8N392	663 aa		15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	NAT8L	Q8N9F0	302 aa		15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	FBXO32	Q969P5	355 aa		15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	TTLL2	Q9BWV7	592 aa		15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	OSBPL2	Q9H1P3	480 aa		15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	INTS9	Q9NV88	658 aa	Known RBP	15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	DNAJC17	Q9NVM6	304 aa	Known RBP	15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	SPG21	Q9NZD8	308 aa		15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	OR12D3	Q9UGF7	316 aa		15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	SHOC2	Q9UQ13	582 aa		15.83	■□□□□ 0.12
DDX39A-209	ENST00000589318	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	RIPK2	O43353	540 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	SNX3	O60493	162 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	LRIG2	O94898	1065 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	SEC24A	O95486	1093 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	ZDHHC11B	P0C7U3	371 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	ALDH3A1	P30838	453 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	GLUD2	P49448	558 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	TPI1	P60174	286 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	RPL10A	P62906	217 aa	Known RBP	15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	PPP2R5D	Q14738	602 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	TAOK1	Q7L7X3	1001 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	RELL1	Q8IUW5	271 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	TP53INP2	Q8IXH6	220 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	NETO2	Q8NC67	525 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	GIPC2	Q8TF65	315 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	SLC39A13	Q96H72	371 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	YME1L1	Q96TA2	773 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	MCOLN1	Q9GZU1	580 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	VCX	Q9H320	206 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	15.82	■□□□□ 0.12	7e-9	■□□□□ 9.8
DDX39A-209	ENST00000589318	IRAK4	Q9NWZ3	460 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	COMMD8	Q9NX08	183 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	CLIC5	Q9NZA1	410 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	AFF4	Q9UHB7	1163 aa	Known RBP	15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	RPL26L1	Q9UNX3	145 aa	Known RBP	15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	ASB3	Q9Y575	518 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	TCRBV7S3A2	A0A539	114 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	SLC38A8	A6NNN8	435 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	KCNU1	A8MYU2	1149 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	SHBG	P04278	402 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	VAV1	P15498	845 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	CCR1	P32246	355 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	ZNF135	P52742	658 aa	Predicted RBP	15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	HTRA4	P83105	476 aa	Predicted RBP	15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	MXRA7	P84157	204 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	GAD2	Q05329	585 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	CCDC15	Q0P6D6	951 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	SLC29A2	Q14542	456 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	FAM133B	Q5BKY9	247 aa	Known RBP	15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	DDX53	Q86TM3	631 aa	Known RBP	15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	CDKL3	Q8IVW4	592 aa	Predicted RBP	15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	LRRC34	Q8IZ02	419 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	ZNF461	Q8TAF7	563 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	BAD	Q92934	168 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	RNF34	Q969K3	372 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	SERPINB11	Q96P15	392 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	TRAPPC9	Q96Q05	1148 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	HAPLN3	Q96S86	360 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	FOXP3	Q9BZS1	431 aa		15.82	■□□□□ 0.12
DDX39A-209	ENST00000589318	TMEM63A	O94886	807 aa		15.81	■□□□□ 0.12
DDX39A-209	ENST00000589318	UBOX5	O94941	541 aa		15.81	■□□□□ 0.12
DDX39A-209	ENST00000589318	GJB5	O95377	273 aa		15.81	■□□□□ 0.12
DDX39A-209	ENST00000589318	ATP6V1C1	P21283	382 aa		15.81	■□□□□ 0.12
DDX39A-209	ENST00000589318	LAMB3	Q13751	1172 aa		15.81	■□□□□ 0.12
DDX39A-209	ENST00000589318	PRKD1	Q15139	912 aa	Predicted RBP	15.81	■□□□□ 0.12
DDX39A-209	ENST00000589318	PARP6	Q2NL67	630 aa		15.81	■□□□□ 0.12
DDX39A-209	ENST00000589318	MANEAL	Q5VSG8	457 aa		15.81	■□□□□ 0.12
DDX39A-209	ENST00000589318	TRMT10C	Q7L0Y3	403 aa	Known RBP	15.81	■□□□□ 0.12
DDX39A-209	ENST00000589318	ASRGL1	Q7L266	308 aa		15.81	■□□□□ 0.12
DDX39A-209	ENST00000589318	PCGF5	Q86SE9	256 aa		15.81	■□□□□ 0.12
DDX39A-209	ENST00000589318	PPIL6	Q8IXY8	311 aa		15.81	■□□□□ 0.12
DDX39A-209	ENST00000589318	TAB3	Q8N5C8	712 aa	Predicted RBP	15.81	■□□□□ 0.12
DDX39A-209	ENST00000589318	NPW	Q8N729	165 aa		15.81	■□□□□ 0.12
DDX39A-209	ENST00000589318	FCRL2	Q96LA5	508 aa	Predicted RBP	15.81	■□□□□ 0.12
DDX39A-209	ENST00000589318	CEP295NL	Q96MC4	621 aa		15.81	■□□□□ 0.12
DDX39A-209	ENST00000589318	RBM15	Q96T37	977 aa	Known RBP eCLIP	15.81	■□□□□ 0.12	3e-8	■■■■■ 30.9
DDX39A-209	ENST00000589318	LGMN	Q99538	433 aa		15.81	■□□□□ 0.12
DDX39A-209	ENST00000589318	EPAS1	Q99814	870 aa		15.81	■□□□□ 0.12
DDX39A-209	ENST00000589318	ELAC2	Q9BQ52	826 aa	Known RBP	15.81	■□□□□ 0.12

Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms