RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 TRIM7Q9C029 511 aa20.75■□□□□ 0.91
SS18-218ENST00000581021 MKRN2Q9H000 416 aaKnown RBP20.75■□□□□ 0.91
SS18-218ENST00000581021 MTG2Q9H4K7 406 aa20.75■□□□□ 0.91
SS18-218ENST00000581021 BCCIPQ9P287 314 aaKnown RBP eCLIP20.75■□□□□ 0.91
SS18-218ENST00000581021 MBD1Q9UIS9 605 aaPredicted RBP20.75■□□□□ 0.91
SS18-218ENST00000581021 NPC1O15118 1278 aa20.74■□□□□ 0.91
SS18-218ENST00000581021 FTLP02792 175 aaPredicted RBP20.74■□□□□ 0.91
SS18-218ENST00000581021 TGM1P22735 817 aa20.74■□□□□ 0.91
SS18-218ENST00000581021 P2RY2P41231 377 aa20.74■□□□□ 0.91
SS18-218ENST00000581021 ZNF252P-AS1Q0IIN9 211 aa20.74■□□□□ 0.91
SS18-218ENST00000581021 MTA1Q13330 715 aa20.74■□□□□ 0.91
SS18-218ENST00000581021 MAMLD1Q13495 774 aa20.74■□□□□ 0.91
SS18-218ENST00000581021 PLEKHG6Q3KR16 790 aa20.74■□□□□ 0.91
SS18-218ENST00000581021 FNDC3BQ53EP0 1204 aaKnown RBP20.74■□□□□ 0.91
SS18-218ENST00000581021 LAIR1Q6GTX8 287 aa20.74■□□□□ 0.91
SS18-218ENST00000581021 PLEKHA7Q6IQ23 1121 aa20.74■□□□□ 0.91
SS18-218ENST00000581021 SERPINA13PQ6UXR4 307 aa20.74■□□□□ 0.91
SS18-218ENST00000581021 STRADAQ7RTN6 431 aa20.74■□□□□ 0.91
SS18-218ENST00000581021 VSTM4Q8IW00 320 aa20.74■□□□□ 0.91
SS18-218ENST00000581021 DUSP15Q9H1R2 295 aaPredicted RBP20.74■□□□□ 0.91
SS18-218ENST00000581021 PARD6AQ9NPB6 346 aa20.74■□□□□ 0.91
SS18-218ENST00000581021 MPP6Q9NZW5 540 aa20.74■□□□□ 0.91
SS18-218ENST00000581021 ARHGAP20Q9P2F6 1191 aa20.74■□□□□ 0.91
SS18-218ENST00000581021 ZNF212Q9UDV6 495 aa20.74■□□□□ 0.91
SS18-218ENST00000581021 NEU3Q9UQ49 428 aa20.74■□□□□ 0.91
SS18-218ENST00000581021 LUC7L2Q9Y383 392 aaKnown RBP20.74■□□□□ 0.91
SS18-218ENST00000581021 DMXL1Q9Y485 3027 aa20.74■□□□□ 0.91
SS18-218ENST00000581021 SPAG17Q6Q759 2223 aa20.73■□□□□ 0.91
SS18-218ENST00000581021 IGLV3-10A0A075B6K4 115 aa20.73■□□□□ 0.91
SS18-218ENST00000581021 DRGXA6NNA5 263 aa20.73■□□□□ 0.91
SS18-218ENST00000581021 GZMAP12544 262 aa20.73■□□□□ 0.91
SS18-218ENST00000581021 POLR2EP19388 210 aaKnown RBP20.73■□□□□ 0.91
SS18-218ENST00000581021 ZNF143P52747 638 aaPredicted RBP20.73■□□□□ 0.91
SS18-218ENST00000581021 COPAP53621 1224 aa20.73■□□□□ 0.91
SS18-218ENST00000581021 TDRD12Q587J7 1177 aaKnown RBP20.73■□□□□ 0.91
SS18-218ENST00000581021 MANEALQ5VSG8 457 aa20.73■□□□□ 0.91
SS18-218ENST00000581021 ZNF557Q8N988 423 aaPredicted RBP20.73■□□□□ 0.91
SS18-218ENST00000581021 VCPIP1Q96JH7 1222 aa20.73■□□□□ 0.91
SS18-218ENST00000581021 ZC3H10Q96K80 434 aaKnown RBP20.73■□□□□ 0.91
SS18-218ENST00000581021 C1orf74Q96LT6 269 aa20.73■□□□□ 0.91
SS18-218ENST00000581021 HAPLN3Q96S86 360 aa20.73■□□□□ 0.91
SS18-218ENST00000581021 KIAA1522Q9P206 1035 aaPredicted RBP20.73■□□□□ 0.91
SS18-218ENST00000581021 NCDNQ9UBB6 729 aa20.73■□□□□ 0.91
SS18-218ENST00000581021 PAXBP1Q9Y5B6 917 aa20.73■□□□□ 0.91
SS18-218ENST00000581021 OR51B4Q9Y5P0 310 aa20.73■□□□□ 0.91
SS18-218ENST00000581021 ABCA7Q8IZY2 2146 aa20.72■□□□□ 0.91
SS18-218ENST00000581021 E9PAM4 449 aa20.72■□□□□ 0.91
SS18-218ENST00000581021 FAM72CH0Y354 149 aa20.72■□□□□ 0.91
SS18-218ENST00000581021 SERPING1P05155 500 aa20.72■□□□□ 0.91
SS18-218ENST00000581021 EPHX1P07099 455 aa20.72■□□□□ 0.91
SS18-218ENST00000581021 ADRA1BP35368 520 aa20.72■□□□□ 0.91
SS18-218ENST00000581021 USP39Q53GS9 565 aaKnown RBP20.72■□□□□ 0.91
SS18-218ENST00000581021 FAM72AQ5TYM5 149 aa20.72■□□□□ 0.91
SS18-218ENST00000581021 SPECC1LQ69YQ0 1117 aa20.72■□□□□ 0.91
SS18-218ENST00000581021 FAM72DQ6L9T8 149 aa20.72■□□□□ 0.91
SS18-218ENST00000581021 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.72■□□□□ 0.91
SS18-218ENST00000581021 FAM72BQ86X60 149 aa20.72■□□□□ 0.91
SS18-218ENST00000581021 PGBD3Q8N328 593 aa20.72■□□□□ 0.91
SS18-218ENST00000581021 IQCDQ96DY2 449 aa20.72■□□□□ 0.91
SS18-218ENST00000581021 ISCUQ9H1K1 167 aa20.72■□□□□ 0.91
SS18-218ENST00000581021 ADAMTS1Q9UHI8 967 aa20.72■□□□□ 0.91
SS18-218ENST00000581021 RAB23Q9ULC3 237 aa20.72■□□□□ 0.91
SS18-218ENST00000581021 NENFQ9UMX5 172 aa20.72■□□□□ 0.91
SS18-218ENST00000581021 TBC1D30Q9Y2I9 924 aa20.72■□□□□ 0.91
SS18-218ENST00000581021 PLXND1Q9Y4D7 1925 aa20.72■□□□□ 0.91
SS18-218ENST00000581021 A0A087X0T9 212 aa20.71■□□□□ 0.91
SS18-218ENST00000581021 CBFA2T2O43439 604 aa20.71■□□□□ 0.91
SS18-218ENST00000581021 RTN2O75298 545 aa20.71■□□□□ 0.91
SS18-218ENST00000581021 CLDN11O75508 207 aa20.71■□□□□ 0.91
SS18-218ENST00000581021 ATP5BP06576 529 aaKnown RBP20.71■□□□□ 0.91
SS18-218ENST00000581021 TPM3P06753 285 aa20.71■□□□□ 0.91
SS18-218ENST00000581021 FAM228BP0C875 321 aa20.71■□□□□ 0.91
SS18-218ENST00000581021 HNRNPH3P31942 346 aaKnown RBP20.71■□□□□ 0.91
SS18-218ENST00000581021 STK19P49842 368 aaPredicted RBP20.71■□□□□ 0.91
SS18-218ENST00000581021 CDH4P55283 916 aa20.71■□□□□ 0.91
SS18-218ENST00000581021 CAMK2GQ13555 558 aaPredicted RBP20.71■□□□□ 0.91
SS18-218ENST00000581021 STARD3Q14849 445 aa20.71■□□□□ 0.91
SS18-218ENST00000581021 TFAP2DQ7Z6R9 452 aa20.71■□□□□ 0.91
SS18-218ENST00000581021 CACUL1Q86Y37 369 aa20.71■□□□□ 0.91
SS18-218ENST00000581021 ARFGAP1Q8N6T3 406 aa20.71■□□□□ 0.91
SS18-218ENST00000581021 ZNF653Q96CK0 615 aa20.71■□□□□ 0.91
SS18-218ENST00000581021 HINFPQ9BQA5 517 aa20.71■□□□□ 0.91
SS18-218ENST00000581021 FEM1AQ9BSK4 669 aa20.71■□□□□ 0.91
SS18-218ENST00000581021 CNPY3Q9BT09 278 aa20.71■□□□□ 0.91
SS18-218ENST00000581021 RBSNQ9H1K0 784 aa20.71■□□□□ 0.91
SS18-218ENST00000581021 SLCO3A1Q9UIG8 710 aa20.71■□□□□ 0.91
SS18-218ENST00000581021 PLA2G4CQ9UP65 541 aa20.71■□□□□ 0.91
SS18-218ENST00000581021 ERVW-1Q9UQF0 538 aa20.71■□□□□ 0.91
SS18-218ENST00000581021 SRGAP2O75044 1071 aa20.7■□□□□ 0.9
SS18-218ENST00000581021 RETP07949 1114 aa20.7■□□□□ 0.9
SS18-218ENST00000581021 PLK1P53350 603 aa20.7■□□□□ 0.9
SS18-218ENST00000581021 PMS2CLQ68D20 193 aa20.7■□□□□ 0.9
SS18-218ENST00000581021 PPP1R2P3Q6NXS1 205 aa20.7■□□□□ 0.9
SS18-218ENST00000581021 DCUN1D2Q6PH85 259 aa20.7■□□□□ 0.9
SS18-218ENST00000581021 KIAA1324Q6UXG2 1013 aaKnown RBP20.7■□□□□ 0.9
SS18-218ENST00000581021 GAS2L3Q86XJ1 694 aa20.7■□□□□ 0.9
SS18-218ENST00000581021 CCDC117Q8IWD4 279 aaPredicted RBP20.7■□□□□ 0.9
SS18-218ENST00000581021 NTAN1Q96AB6 310 aa20.7■□□□□ 0.9
SS18-218ENST00000581021 PSMB7Q99436 277 aa20.7■□□□□ 0.9
SS18-218ENST00000581021 DNAJC7Q99615 494 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms