RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 PKDCCQ504Y2 493 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 MDH1BQ5I0G3 518 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 EFHC1Q5JVL4 640 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 PMS2CLQ68D20 193 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 POLNQ7Z5Q5 900 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 SIX6OS1Q8N1H7 587 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 ARL14EPQ8N8R7 260 aaPredicted RBP10.54□□□□□ -0.72
SS18-210ENST00000578700 C2orf15Q8WU43 125 aaKnown RBP10.54□□□□□ -0.72
SS18-210ENST00000578700 SLC35F5Q8WV83 523 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 HNRNPLLQ8WVV9 542 aaKnown RBP10.54□□□□□ -0.72
SS18-210ENST00000578700 RLN3Q8WXF3 142 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 ATP2A3Q93084 1043 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 ACBD6Q9BR61 282 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 CNPY3Q9BT09 278 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 LRRC1Q9BTT6 524 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 DUSP16Q9BY84 665 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 TRIM7Q9C029 511 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 RAB17Q9H0T7 212 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 LINC00597Q9H2U6 94 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.54□□□□□ -0.72
SS18-210ENST00000578700 CYTH4Q9UIA0 394 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 TMEM59LQ9UK28 342 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 RAB21Q9UL25 225 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 LHX6Q9UPM6 363 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 UTP11Q9Y3A2 253 aaKnown RBP10.54□□□□□ -0.72
SS18-210ENST00000578700 GCN1Q92616 2671 aaKnown RBP10.54□□□□□ -0.72
SS18-210ENST00000578700 GON4LQ3T8J9 2241 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 SMG1Q96Q15 3661 aaKnown RBP10.54□□□□□ -0.72
SS18-210ENST00000578700 PTPRDP23468 1912 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 ANAPC1Q9H1A4 1944 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 TRAV19A0A0A6YYK7 116 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 TCRBV5S1A1TA0A578 114 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 ATP8B1O43520 1251 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 PHF2O75151 1096 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 FBXO21O94952 628 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 HEXIM1O94992 359 aaKnown RBP10.53□□□□□ -0.72
SS18-210ENST00000578700 GJB6O95452 261 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 CKMP06732 381 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 USP17L7P0C7H9 530 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 LCP1P13796 627 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 PDGFRAP16234 1089 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 CSRP1P21291 193 aaKnown RBP10.53□□□□□ -0.72
SS18-210ENST00000578700 ACAT1P24752 427 aaKnown RBP10.53□□□□□ -0.72
SS18-210ENST00000578700 CYP2F1P24903 491 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 PLA2G4AP47712 749 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 MARCKSL1P49006 195 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 ZNF143P52747 638 aaPredicted RBP10.53□□□□□ -0.72
SS18-210ENST00000578700 RING1Q06587 406 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 SMARCB1Q12824 385 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 TRIM61Q5EBN2 209 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 DCAF12L1Q5VU92 463 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 PMF1Q6P1K2 205 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 C4orf50Q6ZRC1 276 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 FAM183BPQ6ZVS7 135 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 OSTM1Q86WC4 334 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 SLC13A5Q86YT5 568 aaPredicted RBP10.53□□□□□ -0.72
SS18-210ENST00000578700 SCN4BQ8IWT1 228 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 SCUBE3Q8IX30 993 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 TMEFF1Q8IYR6 380 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 PGBD3Q8N328 593 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 MYCBPAPQ8TBZ2 947 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 OSCP1Q8WVF1 389 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.53□□□□□ -0.726e-8■■■■□ 26.7
SS18-210ENST00000578700 SLC22A12Q96S37 553 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 TMEM121BQ9BXQ6 578 aaPredicted RBP10.53□□□□□ -0.72
SS18-210ENST00000578700 NUSAP1Q9BXS6 441 aaKnown RBP10.53□□□□□ -0.72
SS18-210ENST00000578700 ACBD3Q9H3P7 528 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 SLC32A1Q9H598 525 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 WASF3Q9UPY6 502 aa10.53□□□□□ -0.72
SS18-210ENST00000578700 SPAARA0A1B0GVQ0 90 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 TMEM8BA6NDV4 472 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 FAM187AA6NFU0 413 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 F8VP50 259 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 PRPSAP2O60256 369 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 AP1G2O75843 785 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 TJP3O95049 919 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 PCK1P35558 622 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 TIE1P35590 1138 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 CLCN6P51797 869 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 DR1Q01658 176 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 GUCY2DQ02846 1103 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 GPS2Q13227 327 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 CUL1Q13616 776 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 ZNF77Q15935 545 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 EML3Q32P44 896 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 OLFML1Q6UWY5 402 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 ARCQ7LC44 396 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 ADAT2Q7Z6V5 191 aaKnown RBP10.52□□□□□ -0.73
SS18-210ENST00000578700 FAM35AQ86V20 835 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 C11orf74Q86VG3 221 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 MAP7D3Q8IWC1 876 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 DEFB119Q8N690 84 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 EMC1Q8N766 993 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 FRMD1Q8N878 549 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 KCTD6Q8NC69 237 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 MDGA1Q8NFP4 955 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 JOSD2Q8TAC2 188 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 SH3RF2Q8TEC5 729 aa10.52□□□□□ -0.73
SS18-210ENST00000578700 USP33Q8TEY7 942 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms