RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 DNAAF5Q86Y56 855 aa20.1■□□□□ 0.81
SS18-209ENST00000578595 FAM160A2Q8N612 972 aaPredicted RBP20.1■□□□□ 0.81
SS18-209ENST00000578595 CAPN11Q9UMQ6 739 aa20.1■□□□□ 0.81
SS18-209ENST00000578595 USP18Q9UMW8 372 aa20.1■□□□□ 0.81
SS18-209ENST00000578595 ITIH6Q6UXX5 1313 aa20.09■□□□□ 0.81
SS18-209ENST00000578595 A0A1W2PQF6 199 aa20.09■□□□□ 0.81
SS18-209ENST00000578595 SIGLEC16A6NMB1 481 aa20.09■□□□□ 0.81
SS18-209ENST00000578595 DDX3XO00571 662 aaKnown RBP eCLIP20.09■□□□□ 0.81
SS18-209ENST00000578595 SERPING1P05155 500 aa20.09■□□□□ 0.81
SS18-209ENST00000578595 NDUFV2P19404 249 aa20.09■□□□□ 0.81
SS18-209ENST00000578595 PTPN9P43378 593 aa20.09■□□□□ 0.81
SS18-209ENST00000578595 RAB6CQ53S08 254 aa20.09■□□□□ 0.81
SS18-209ENST00000578595 SYT11Q9BT88 431 aa20.09■□□□□ 0.81
SS18-209ENST00000578595 RAB6CQ9H0N0 254 aa20.09■□□□□ 0.81
SS18-209ENST00000578595 MUC3BQ9H195 1237 aa20.09■□□□□ 0.81
SS18-209ENST00000578595 SLC6A17Q9H1V8 727 aa20.09■□□□□ 0.81
SS18-209ENST00000578595 ANLNQ9NQW6 1124 aa20.09■□□□□ 0.81
SS18-209ENST00000578595 MYO1AQ9UBC5 1043 aa20.09■□□□□ 0.81
SS18-209ENST00000578595 BZW2Q9Y6E2 419 aaKnown RBP20.09■□□□□ 0.81
SS18-209ENST00000578595 CCP110O43303 1012 aa20.08■□□□□ 0.81
SS18-209ENST00000578595 RTN2O75298 545 aa20.08■□□□□ 0.81
SS18-209ENST00000578595 FTLP02792 175 aaPredicted RBP20.08■□□□□ 0.81
SS18-209ENST00000578595 ASLP04424 464 aa20.08■□□□□ 0.81
SS18-209ENST00000578595 OXCT1P55809 520 aa20.08■□□□□ 0.81
SS18-209ENST00000578595 RPL7AP62424 266 aaKnown RBP20.08■□□□□ 0.81
SS18-209ENST00000578595 BYSLQ13895 437 aaKnown RBP20.08■□□□□ 0.81
SS18-209ENST00000578595 PLEKHG6Q3KR16 790 aa20.08■□□□□ 0.81
SS18-209ENST00000578595 RNF43Q68DV7 783 aa20.08■□□□□ 0.81
SS18-209ENST00000578595 SPECC1LQ69YQ0 1117 aa20.08■□□□□ 0.81
SS18-209ENST00000578595 STRADAQ7RTN6 431 aa20.08■□□□□ 0.81
SS18-209ENST00000578595 TFAP2DQ7Z6R9 452 aa20.08■□□□□ 0.81
SS18-209ENST00000578595 APCDD1Q8J025 514 aa20.08■□□□□ 0.81
SS18-209ENST00000578595 PARVAQ9NVD7 372 aa20.08■□□□□ 0.81
SS18-209ENST00000578595 CNOT8Q9UFF9 292 aaKnown RBP20.08■□□□□ 0.81
SS18-209ENST00000578595 CYP8B1Q9UNU6 501 aa20.08■□□□□ 0.81
SS18-209ENST00000578595 ZNF292O60281 2723 aa20.08■□□□□ 0.8
SS18-209ENST00000578595 PI4KAP42356 2102 aa20.08■□□□□ 0.8
SS18-209ENST00000578595 E9PAM4 449 aa20.07■□□□□ 0.8
SS18-209ENST00000578595 CLDN11O75508 207 aa20.07■□□□□ 0.8
SS18-209ENST00000578595 RHOBTB1O94844 696 aa20.07■□□□□ 0.8
SS18-209ENST00000578595 RHOCP08134 193 aa20.07■□□□□ 0.8
SS18-209ENST00000578595 PLEKP08567 350 aaPredicted RBP20.07■□□□□ 0.8
SS18-209ENST00000578595 BCKDHBP21953 392 aa20.07■□□□□ 0.8
SS18-209ENST00000578595 PSMA2P25787 234 aa20.07■□□□□ 0.8
SS18-209ENST00000578595 CDH4P55283 916 aa20.07■□□□□ 0.8
SS18-209ENST00000578595 TRIM14Q14142 442 aa20.07■□□□□ 0.8
SS18-209ENST00000578595 TSR1Q2NL82 804 aaKnown RBP20.07■□□□□ 0.8
SS18-209ENST00000578595 KIAA0907Q7Z7F0 614 aaPredicted RBP20.07■□□□□ 0.8
SS18-209ENST00000578595 C11orf74Q86VG3 221 aa20.07■□□□□ 0.8
SS18-209ENST00000578595 KIAA2013Q8IYS2 634 aa20.07■□□□□ 0.8
SS18-209ENST00000578595 OLIG1Q8TAK6 271 aa20.07■□□□□ 0.8
SS18-209ENST00000578595 SYN2Q92777 582 aaPredicted RBP20.07■□□□□ 0.8
SS18-209ENST00000578595 TRIM11Q96F44 468 aa20.07■□□□□ 0.8
SS18-209ENST00000578595 VCPIP1Q96JH7 1222 aa20.07■□□□□ 0.8
SS18-209ENST00000578595 PRDM16Q9HAZ2 1276 aa20.07■□□□□ 0.8
SS18-209ENST00000578595 MPP6Q9NZW5 540 aa20.07■□□□□ 0.8
SS18-209ENST00000578595 ADAMTS1Q9UHI8 967 aa20.07■□□□□ 0.8
SS18-209ENST00000578595 VPS28Q9UK41 221 aa20.07■□□□□ 0.8
SS18-209ENST00000578595 INTS6Q9UL03 887 aaKnown RBP20.07■□□□□ 0.8
SS18-209ENST00000578595 I6L893 689 aaPredicted RBP20.06■□□□□ 0.8
SS18-209ENST00000578595 CNTN5O94779 1100 aa20.06■□□□□ 0.8
SS18-209ENST00000578595 ACADMP11310 421 aa20.06■□□□□ 0.8
SS18-209ENST00000578595 GZMAP12544 262 aa20.06■□□□□ 0.8
SS18-209ENST00000578595 MZF1P28698 734 aaPredicted RBP20.06■□□□□ 0.8
SS18-209ENST00000578595 NNMTP40261 264 aa20.06■□□□□ 0.8
SS18-209ENST00000578595 CTSOP43234 321 aaPredicted RBP20.06■□□□□ 0.8
SS18-209ENST00000578595 DHPSP49366 369 aaPredicted RBP20.06■□□□□ 0.8
SS18-209ENST00000578595 HDAC4P56524 1084 aa20.06■□□□□ 0.8
SS18-209ENST00000578595 SPEM2Q0P670 501 aa20.06■□□□□ 0.8
SS18-209ENST00000578595 SLC12A1Q13621 1099 aa20.06■□□□□ 0.8
SS18-209ENST00000578595 PLK5Q496M5 336 aa20.06■□□□□ 0.8
SS18-209ENST00000578595 ALFQ53S48 1182 aa20.06■□□□□ 0.8
SS18-209ENST00000578595 ACBD5Q5T8D3 534 aaPredicted RBP20.06■□□□□ 0.8
SS18-209ENST00000578595 RWDD4Q6NW29 188 aaKnown RBP20.06■□□□□ 0.8
SS18-209ENST00000578595 ARMCX6Q7L4S7 300 aa20.06■□□□□ 0.8
SS18-209ENST00000578595 CCDC185Q8N715 623 aa20.06■□□□□ 0.8
SS18-209ENST00000578595 PRCCQ92733 491 aaPredicted RBP20.06■□□□□ 0.8
SS18-209ENST00000578595 MRGPRX1Q96LB2 322 aa20.06■□□□□ 0.8
SS18-209ENST00000578595 HAPLN3Q96S86 360 aa20.06■□□□□ 0.8
SS18-209ENST00000578595 PPP1R9BQ96SB3 815 aa20.06■□□□□ 0.8
SS18-209ENST00000578595 CNPY3Q9BT09 278 aa20.06■□□□□ 0.8
SS18-209ENST00000578595 TRIM5Q9C035 493 aa20.06■□□□□ 0.8
SS18-209ENST00000578595 SLC25A13Q9UJS0 675 aa20.06■□□□□ 0.8
SS18-209ENST00000578595 ERVW-1Q9UQF0 538 aa20.06■□□□□ 0.8
SS18-209ENST00000578595 SCINQ9Y6U3 715 aa20.06■□□□□ 0.8
SS18-209ENST00000578595 NUMA1Q14980 2115 aa20.06■□□□□ 0.8
SS18-209ENST00000578595 TNRC6BQ9UPQ9 1833 aaKnown RBP20.06■□□□□ 0.8
SS18-209ENST00000578595 ENDOD1O94919 500 aa20.05■□□□□ 0.8
SS18-209ENST00000578595 RETP07949 1114 aa20.05■□□□□ 0.8
SS18-209ENST00000578595 ADRA1BP35368 520 aa20.05■□□□□ 0.8
SS18-209ENST00000578595 P2RY2P41231 377 aa20.05■□□□□ 0.8
SS18-209ENST00000578595 STK19P49842 368 aaPredicted RBP20.05■□□□□ 0.8
SS18-209ENST00000578595 ZNF143P52747 638 aaPredicted RBP20.05■□□□□ 0.8
SS18-209ENST00000578595 ECT2LQ008S8 904 aa20.05■□□□□ 0.8
SS18-209ENST00000578595 CREB5Q02930 508 aa20.05■□□□□ 0.8
SS18-209ENST00000578595 PTPRNQ16849 979 aa20.05■□□□□ 0.8
SS18-209ENST00000578595 EFHC2Q5JST6 749 aa20.05■□□□□ 0.8
SS18-209ENST00000578595 HGSNATQ68CP4 663 aa20.05■□□□□ 0.8
SS18-209ENST00000578595 CXorf57Q6NSI4 855 aaKnown RBP20.05■□□□□ 0.8
SS18-209ENST00000578595 TMC6Q7Z403 805 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms