RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 RNF43Q68DV7 783 aa15.7■□□□□ 0.1
SS18-206ENST00000577572 WDR93Q6P2C0 686 aa15.7■□□□□ 0.1
SS18-206ENST00000577572 C1orf228Q6PIY5 440 aa15.7■□□□□ 0.1
SS18-206ENST00000577572 SETD3Q86TU7 594 aaPredicted RBP15.7■□□□□ 0.1
SS18-206ENST00000577572 LGI2Q8N0V4 545 aa15.7■□□□□ 0.1
SS18-206ENST00000577572 MICALL1Q8N3F8 863 aa15.7■□□□□ 0.1
SS18-206ENST00000577572 LRRN4CLQ8ND94 238 aa15.7■□□□□ 0.1
SS18-206ENST00000577572 ITFG1Q8TB96 612 aa15.7■□□□□ 0.1
SS18-206ENST00000577572 ZSCAN18Q8TBC5 510 aaPredicted RBP15.7■□□□□ 0.1
SS18-206ENST00000577572 TFB1MQ8WVM0 346 aaKnown RBP15.7■□□□□ 0.1
SS18-206ENST00000577572 ATG4AQ8WYN0 398 aa15.7■□□□□ 0.1
SS18-206ENST00000577572 SEC14L1Q92503 715 aa15.7■□□□□ 0.1
SS18-206ENST00000577572 FGF13Q92913 245 aa15.7■□□□□ 0.1
SS18-206ENST00000577572 QKIQ96PU8 341 aaKnown RBP eCLIP15.7■□□□□ 0.13e-6■■■■□ 23
SS18-206ENST00000577572 VAT1Q99536 393 aa15.7■□□□□ 0.1
SS18-206ENST00000577572 KLC2Q9H0B6 622 aa15.7■□□□□ 0.1
SS18-206ENST00000577572 ETNK2Q9NVF9 386 aa15.7■□□□□ 0.1
SS18-206ENST00000577572 ZNF212Q9UDV6 495 aa15.7■□□□□ 0.1
SS18-206ENST00000577572 SNX10Q9Y5X0 201 aa15.7■□□□□ 0.1
SS18-206ENST00000577572 DENND4CQ5VZ89 1909 aa15.7■□□□□ 0.1
SS18-206ENST00000577572 LAMA3Q16787 3333 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 H7C0C1 242 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 NRG2O14511 850 aaPredicted RBP15.69■□□□□ 0.1
SS18-206ENST00000577572 RAD51CO43502 376 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 MFSD11O43934 449 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 CYBBP04839 570 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 IRF1P10914 325 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 SLC6A4P31645 630 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 ATP5OP48047 213 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 PPIDQ08752 370 aaKnown RBP15.69■□□□□ 0.1
SS18-206ENST00000577572 SLC10A2Q12908 348 aaPredicted RBP15.69■□□□□ 0.1
SS18-206ENST00000577572 PTK6Q13882 451 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 PRKD1Q15139 912 aaPredicted RBP15.69■□□□□ 0.1
SS18-206ENST00000577572 ERCC6LQ2NKX8 1250 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 TIGD7Q6NT04 549 aaPredicted RBP15.69■□□□□ 0.1
SS18-206ENST00000577572 DARS2Q6PI48 645 aaKnown RBP15.69■□□□□ 0.1
SS18-206ENST00000577572 JAMLQ86YT9 394 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 IFT20Q8IY31 132 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 BBOF1Q8ND07 529 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 RSAD2Q8WXG1 361 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 IGSF8Q969P0 613 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 TMA16Q96EY4 203 aaKnown RBP15.69■□□□□ 0.1
SS18-206ENST00000577572 ASB16Q96NS5 453 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 ERP44Q9BS26 406 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 MAGEH1Q9H213 219 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 PCDH9Q9HC56 1237 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 CLDND1Q9NY35 253 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 TBC1D30Q9Y2I9 924 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 NEU2Q9Y3R4 380 aa15.69■□□□□ 0.1
SS18-206ENST00000577572 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.68■□□□□ 0.1
SS18-206ENST00000577572 GOLGA6L7A0A1B0GV03 622 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 ILVBLA1L0T0 632 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 C5orf60A6NFR6 353 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 ARHGAP42A6NI28 874 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 BHMG1C9JSJ3 638 aaPredicted RBP15.68■□□□□ 0.1
SS18-206ENST00000577572 TBX10O75333 385 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 STK10O94804 968 aaKnown RBP15.68■□□□□ 0.1
SS18-206ENST00000577572 IGFBP4P22692 258 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 CCNCP24863 283 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 TNFRSF8P28908 595 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 OR1E1P30953 314 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 ACTN2P35609 894 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 GARSP41250 739 aaKnown RBP15.68■□□□□ 0.1
SS18-206ENST00000577572 ZNF177Q13360 481 aaPredicted RBP15.68■□□□□ 0.1
SS18-206ENST00000577572 SNX1Q13596 522 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 CUL1Q13616 776 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 PPP1R7Q15435 360 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 P3H1Q32P28 736 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 TMCO4Q5TGY1 634 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 HEATR6Q6AI08 1181 aaKnown RBP15.68■□□□□ 0.1
SS18-206ENST00000577572 NPNTQ6UXI9 565 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 GSTA5Q7RTV2 222 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 CCDC117Q8IWD4 279 aaPredicted RBP15.68■□□□□ 0.1
SS18-206ENST00000577572 TDRD5Q8NAT2 981 aaKnown RBP15.68■□□□□ 0.1
SS18-206ENST00000577572 SMRP1Q8NCR6 262 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 CCDC114Q96M63 670 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 ZSWIM3Q96MP5 696 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 USP29Q9HBJ7 922 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 MARK1Q9P0L2 795 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 SAE1Q9UBE0 346 aaPredicted RBP15.68■□□□□ 0.1
SS18-206ENST00000577572 RAB21Q9UL25 225 aa15.68■□□□□ 0.1
SS18-206ENST00000577572 NOTCH4Q99466 2003 aa15.67■□□□□ 0.1
SS18-206ENST00000577572 SMAPO00193 183 aa15.67■□□□□ 0.1
SS18-206ENST00000577572 TTI1O43156 1089 aa15.67■□□□□ 0.1
SS18-206ENST00000577572 RAMP2O60895 175 aa15.67■□□□□ 0.1
SS18-206ENST00000577572 GCATO75600 419 aa15.67■□□□□ 0.1
SS18-206ENST00000577572 HEXIM1O94992 359 aaKnown RBP15.67■□□□□ 0.1
SS18-206ENST00000577572 PRAMEF12O95522 483 aa15.67■□□□□ 0.1
SS18-206ENST00000577572 LTBRP36941 435 aa15.67■□□□□ 0.1
SS18-206ENST00000577572 GGCXP38435 758 aa15.67■□□□□ 0.1
SS18-206ENST00000577572 KCNJ1P48048 391 aa15.67■□□□□ 0.1
SS18-206ENST00000577572 SLC12A1Q13621 1099 aa15.67■□□□□ 0.1
SS18-206ENST00000577572 ANO4Q32M45 955 aa15.67■□□□□ 0.1
SS18-206ENST00000577572 ALFQ53S48 1182 aa15.67■□□□□ 0.1
SS18-206ENST00000577572 DUPD1Q68J44 220 aa15.67■□□□□ 0.1
SS18-206ENST00000577572 ARHGAP12Q8IWW6 846 aa15.67■□□□□ 0.1
SS18-206ENST00000577572 BBS7Q8IWZ6 715 aa15.67■□□□□ 0.1
SS18-206ENST00000577572 NPWQ8N729 165 aa15.67■□□□□ 0.1
SS18-206ENST00000577572 HTR3CQ8WXA8 447 aa15.67■□□□□ 0.1
SS18-206ENST00000577572 WBP2Q969T9 261 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms