RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 HDDC3Q8N4P3 179 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 EPS8L1Q8TE68 723 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 SNX19Q92543 992 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 TKTL2Q9H0I9 626 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 MIR1-1HGQ9H1L0 117 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 GANQ9H2C0 597 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 VANGL2Q9ULK5 521 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 ERVW-1Q9UQF0 538 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 NCKAP1Q9Y2A7 1128 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 NUP205Q92621 2012 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 LGALS16A8MUM7 142 aa16■□□□□ 0.15
SF3B3-215ENST00000577085 PAGE1O75459 146 aa16■□□□□ 0.15
SF3B3-215ENST00000577085 PDGFRAP16234 1089 aa16■□□□□ 0.15
SF3B3-215ENST00000577085 ZNF18P17022 549 aa16■□□□□ 0.15
SF3B3-215ENST00000577085 SCNN1AP37088 669 aa16■□□□□ 0.15
SF3B3-215ENST00000577085 GABRB2P47870 512 aa16■□□□□ 0.15
SF3B3-215ENST00000577085 CDR2Q01850 454 aa16■□□□□ 0.15
SF3B3-215ENST00000577085 TYRO3Q06418 890 aa16■□□□□ 0.15
SF3B3-215ENST00000577085 SULT2A1Q06520 285 aa16■□□□□ 0.15
SF3B3-215ENST00000577085 EIF4EBP2Q13542 120 aaPredicted RBP16■□□□□ 0.15
SF3B3-215ENST00000577085 HNRNPA1L2Q32P51 320 aaKnown RBP16■□□□□ 0.15
SF3B3-215ENST00000577085 SLC25A52Q3SY17 297 aa16■□□□□ 0.15
SF3B3-215ENST00000577085 BRMS1LQ5PSV4 323 aa16■□□□□ 0.15
SF3B3-215ENST00000577085 DCAF12L1Q5VU92 463 aa16■□□□□ 0.15
SF3B3-215ENST00000577085 FBXL22Q6P050 247 aa16■□□□□ 0.15
SF3B3-215ENST00000577085 LRRC31Q6UY01 552 aa16■□□□□ 0.15
SF3B3-215ENST00000577085 XYLT1Q86Y38 959 aa16■□□□□ 0.15
SF3B3-215ENST00000577085 DHX40Q8IX18 779 aaKnown RBP16■□□□□ 0.15
SF3B3-215ENST00000577085 KDM1BQ8NB78 822 aa16■□□□□ 0.15
SF3B3-215ENST00000577085 LMLNQ96KR4 655 aa16■□□□□ 0.15
SF3B3-215ENST00000577085 PRMT1Q99873 361 aaKnown RBP16■□□□□ 0.15
SF3B3-215ENST00000577085 LIMA1Q9UHB6 759 aaKnown RBP16■□□□□ 0.15
SF3B3-215ENST00000577085 SCML1Q9UN30 329 aa16■□□□□ 0.15
SF3B3-215ENST00000577085 HS3ST4Q9Y661 456 aa16■□□□□ 0.15
SF3B3-215ENST00000577085 CEP250Q9BV73 2442 aa16■□□□□ 0.15
SF3B3-215ENST00000577085 EDDM13A0A1B0GTR0 161 aa15.99■□□□□ 0.15
SF3B3-215ENST00000577085 IGLV3-19P01714 112 aa15.99■□□□□ 0.15
SF3B3-215ENST00000577085 ADRB1P08588 477 aa15.99■□□□□ 0.15
SF3B3-215ENST00000577085 MAOBP27338 520 aa15.99■□□□□ 0.15
SF3B3-215ENST00000577085 NOVA1P51513 510 aaKnown RBP15.99■□□□□ 0.15
SF3B3-215ENST00000577085 RPS14P62263 151 aaKnown RBP15.99■□□□□ 0.15
SF3B3-215ENST00000577085 NOMO3P69849 1222 aa15.99■□□□□ 0.15
SF3B3-215ENST00000577085 CENPCQ03188 943 aa15.99■□□□□ 0.15
SF3B3-215ENST00000577085 C2CD6Q53TS8 623 aa15.99■□□□□ 0.15
SF3B3-215ENST00000577085 PSAPL1Q6NUJ1 521 aa15.99■□□□□ 0.15
SF3B3-215ENST00000577085 TRIM72Q6ZMU5 477 aa15.99■□□□□ 0.15
SF3B3-215ENST00000577085 APCDD1Q8J025 514 aa15.99■□□□□ 0.15
SF3B3-215ENST00000577085 AOPEPQ8N6M6 819 aa15.99■□□□□ 0.15
SF3B3-215ENST00000577085 SLC20A1Q8WUM9 679 aa15.99■□□□□ 0.15
SF3B3-215ENST00000577085 NPY6RQ99463 290 aa15.99■□□□□ 0.15
SF3B3-215ENST00000577085 BTBD1Q9H0C5 482 aa15.99■□□□□ 0.15
SF3B3-215ENST00000577085 FSCN3Q9NQT6 498 aa15.99■□□□□ 0.15
SF3B3-215ENST00000577085 PIGVQ9NUD9 493 aa15.99■□□□□ 0.15
SF3B3-215ENST00000577085 SEPT11Q9NVA2 429 aaKnown RBP15.99■□□□□ 0.15
SF3B3-215ENST00000577085 SLC25A13Q9UJS0 675 aa15.99■□□□□ 0.15
SF3B3-215ENST00000577085 INTS6Q9UL03 887 aaKnown RBP15.99■□□□□ 0.15
SF3B3-215ENST00000577085 A0A1B0GTW7 788 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 TARSL2A2RTX5 802 aaKnown RBP15.98■□□□□ 0.15
SF3B3-215ENST00000577085 ARHGAP33O14559 1287 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 CDX4O14627 284 aaPredicted RBP15.98■□□□□ 0.15
SF3B3-215ENST00000577085 TM4SF5O14894 197 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 SIN3BO75182 1162 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 CLDN11O75508 207 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 KCNK5O95279 499 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 LAMA1P25391 3075 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 CTSOP43234 321 aaPredicted RBP15.98■□□□□ 0.15
SF3B3-215ENST00000577085 NSFP46459 744 aaKnown RBP15.98■□□□□ 0.15
SF3B3-215ENST00000577085 CXCR3P49682 368 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 NUMBP49757 651 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 JAM2P57087 298 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 ACCSLQ4AC99 568 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 ANO6Q4KMQ2 910 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 ACBD5Q5T8D3 534 aaPredicted RBP15.98■□□□□ 0.15
SF3B3-215ENST00000577085 SH3PXD2AQ5TCZ1 1133 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 IGSF8Q969P0 613 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 RPL10LQ96L21 214 aaKnown RBP15.98■□□□□ 0.15
SF3B3-215ENST00000577085 TBCBQ99426 244 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 OMDQ99983 421 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 MUC3BQ9H195 1237 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 PCED1AQ9H1Q7 454 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 RSPH9Q9H1X1 276 aaPredicted RBP15.98■□□□□ 0.15
SF3B3-215ENST00000577085 MTG2Q9H4K7 406 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 SLC32A1Q9H598 525 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 NOCTQ9UK39 431 aaKnown RBP15.98■□□□□ 0.15
SF3B3-215ENST00000577085 VPS28Q9UK41 221 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 SIK3Q9Y2K2 1263 aa15.98■□□□□ 0.15
SF3B3-215ENST00000577085 SMTNL1A8MU46 457 aa15.97■□□□□ 0.15
SF3B3-215ENST00000577085 METTL12A8MUP2 240 aa15.97■□□□□ 0.15
SF3B3-215ENST00000577085 TTC34A8MYJ7 566 aa15.97■□□□□ 0.15
SF3B3-215ENST00000577085 EPHB6O15197 1021 aa15.97■□□□□ 0.15
SF3B3-215ENST00000577085 OPHN1O60890 802 aa15.97■□□□□ 0.15
SF3B3-215ENST00000577085 ADCY5O95622 1261 aa15.97■□□□□ 0.15
SF3B3-215ENST00000577085 SEMA4FO95754 770 aa15.97■□□□□ 0.15
SF3B3-215ENST00000577085 CCDC172P0C7W6 258 aa15.97■□□□□ 0.15
SF3B3-215ENST00000577085 MZF1P28698 734 aaPredicted RBP15.97■□□□□ 0.15
SF3B3-215ENST00000577085 RDXP35241 583 aaKnown RBP15.97■□□□□ 0.15
SF3B3-215ENST00000577085 GGCXP38435 758 aa15.97■□□□□ 0.15
SF3B3-215ENST00000577085 CDH4P55283 916 aa15.97■□□□□ 0.15
SF3B3-215ENST00000577085 CAVIN1Q6NZI2 390 aaKnown RBP15.97■□□□□ 0.15
SF3B3-215ENST00000577085 ZCCHC9Q8N567 271 aaKnown RBP15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms