RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 PRAMEF26H0Y7S4 382 aa18.78■□□□□ 0.6
CLK3-227ENST00000570296 PHACTR2O75167 634 aa18.78■□□□□ 0.6
CLK3-227ENST00000570296 ASLP04424 464 aa18.78■□□□□ 0.6
CLK3-227ENST00000570296 IDEP14735 1019 aa18.78■□□□□ 0.6
CLK3-227ENST00000570296 CD70P32970 193 aa18.78■□□□□ 0.6
CLK3-227ENST00000570296 PSMD8P48556 350 aa18.78■□□□□ 0.6
CLK3-227ENST00000570296 NDST1P52848 882 aa18.78■□□□□ 0.6
CLK3-227ENST00000570296 TBR1Q16650 682 aa18.78■□□□□ 0.6
CLK3-227ENST00000570296 FOXR1Q6PIV2 292 aa18.78■□□□□ 0.6
CLK3-227ENST00000570296 RSRC2Q7L4I2 434 aaKnown RBP18.78■□□□□ 0.6
CLK3-227ENST00000570296 ARHGAP18Q8N392 663 aa18.78■□□□□ 0.6
CLK3-227ENST00000570296 ZNF557Q8N988 423 aaPredicted RBP18.78■□□□□ 0.6
CLK3-227ENST00000570296 RDH13Q8NBN7 331 aa18.78■□□□□ 0.6
CLK3-227ENST00000570296 ZNF564Q8TBZ8 553 aaPredicted RBP18.78■□□□□ 0.6
CLK3-227ENST00000570296 ZNF516Q92618 1163 aa18.78■□□□□ 0.6
CLK3-227ENST00000570296 WDR70Q9NW82 654 aa18.78■□□□□ 0.6
CLK3-227ENST00000570296 HMGXB4Q9UGU5 601 aa18.78■□□□□ 0.6
CLK3-227ENST00000570296 PCDHGA7Q9Y5G6 932 aa18.78■□□□□ 0.6
CLK3-227ENST00000570296 FBN2P35556 2912 aa18.77■□□□□ 0.6
CLK3-227ENST00000570296 STX6O43752 255 aa18.77■□□□□ 0.6
CLK3-227ENST00000570296 P4HA1P13674 534 aa18.77■□□□□ 0.6
CLK3-227ENST00000570296 KCNMA1Q12791 1236 aa18.77■□□□□ 0.6
CLK3-227ENST00000570296 MPP7Q5T2T1 576 aa18.77■□□□□ 0.6
CLK3-227ENST00000570296 STXBP4Q6ZWJ1 553 aa18.77■□□□□ 0.6
CLK3-227ENST00000570296 SV2BQ7L1I2 683 aa18.77■□□□□ 0.6
CLK3-227ENST00000570296 TRIM69Q86WT6 500 aa18.77■□□□□ 0.6
CLK3-227ENST00000570296 LRRC4CQ9HCJ2 640 aa18.77■□□□□ 0.6
CLK3-227ENST00000570296 NCKIPSDQ9NZQ3 722 aa18.77■□□□□ 0.6
CLK3-227ENST00000570296 ACSL6Q9UKU0 697 aa18.77■□□□□ 0.6
CLK3-227ENST00000570296 CCDC187A0A096LP49 1063 aa18.76■□□□□ 0.59
CLK3-227ENST00000570296 EDDM13A0A1B0GTR0 161 aa18.76■□□□□ 0.59
CLK3-227ENST00000570296 SCAMP1O15126 338 aa18.76■□□□□ 0.59
CLK3-227ENST00000570296 SLC7A4O43246 635 aa18.76■□□□□ 0.59
CLK3-227ENST00000570296 NOBOXO60393 691 aa18.76■□□□□ 0.59
CLK3-227ENST00000570296 RNGTTO60942 597 aaKnown RBP18.76■□□□□ 0.59
CLK3-227ENST00000570296 CLSTN1O94985 981 aa18.76■□□□□ 0.59
CLK3-227ENST00000570296 LATS1O95835 1130 aa18.76■□□□□ 0.59
CLK3-227ENST00000570296 BMP15O95972 392 aa18.76■□□□□ 0.59
CLK3-227ENST00000570296 SLFN14P0C7P3 912 aa18.76■□□□□ 0.59
CLK3-227ENST00000570296 SETMARQ53H47 684 aaPredicted RBP18.76■□□□□ 0.59
CLK3-227ENST00000570296 ADGRF1Q5T601 910 aa18.76■□□□□ 0.59
CLK3-227ENST00000570296 WFDC5Q8TCV5 224 aa18.76■□□□□ 0.59
CLK3-227ENST00000570296 FAM131CQ96AQ9 280 aa18.76■□□□□ 0.59
CLK3-227ENST00000570296 MRGPRX3Q96LB0 322 aa18.76■□□□□ 0.59
CLK3-227ENST00000570296 FAM129BQ96TA1 746 aa18.76■□□□□ 0.59
CLK3-227ENST00000570296 IRX2Q9BZI1 471 aaPredicted RBP18.76■□□□□ 0.59
CLK3-227ENST00000570296 ADNPQ9H2P0 1102 aa18.76■□□□□ 0.59
CLK3-227ENST00000570296 K7ESM1 405 aa18.75■□□□□ 0.59
CLK3-227ENST00000570296 KRT38O76015 456 aa18.75■□□□□ 0.59
CLK3-227ENST00000570296 MAT2AP31153 395 aaKnown RBP18.75■□□□□ 0.59
CLK3-227ENST00000570296 IGFBP7Q16270 282 aa18.75■□□□□ 0.59
CLK3-227ENST00000570296 C14orf80Q86SX3 495 aa18.75■□□□□ 0.59
CLK3-227ENST00000570296 ARRDC3Q96B67 414 aa18.75■□□□□ 0.59
CLK3-227ENST00000570296 IFT43Q96FT9 208 aa18.75■□□□□ 0.59
CLK3-227ENST00000570296 PANK4Q9NVE7 773 aa18.75■□□□□ 0.59
CLK3-227ENST00000570296 ITIH6Q6UXX5 1313 aa18.74■□□□□ 0.59
CLK3-227ENST00000570296 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.74■□□□□ 0.59
CLK3-227ENST00000570296 PLRG1O43660 514 aaKnown RBP18.74■□□□□ 0.59
CLK3-227ENST00000570296 CENPBP07199 599 aaPredicted RBP18.74■□□□□ 0.59
CLK3-227ENST00000570296 SLC5A2P31639 672 aa18.74■□□□□ 0.59
CLK3-227ENST00000570296 DRD3P35462 400 aa18.74■□□□□ 0.59
CLK3-227ENST00000570296 CASRP41180 1078 aa18.74■□□□□ 0.59
CLK3-227ENST00000570296 CSKP41240 450 aa18.74■□□□□ 0.59
CLK3-227ENST00000570296 ZNF177Q13360 481 aaPredicted RBP18.74■□□□□ 0.59
CLK3-227ENST00000570296 BIRC3Q13489 604 aa18.74■□□□□ 0.59
CLK3-227ENST00000570296 NCOA4Q13772 614 aa18.74■□□□□ 0.59
CLK3-227ENST00000570296 MORC3Q14149 939 aa18.74■□□□□ 0.59
CLK3-227ENST00000570296 ZCCHC8Q6NZY4 707 aaKnown RBP18.74■□□□□ 0.59
CLK3-227ENST00000570296 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP18.74■□□□□ 0.59
CLK3-227ENST00000570296 ZSCAN1Q8NBB4 408 aa18.74■□□□□ 0.59
CLK3-227ENST00000570296 TMEM145Q8NBT3 493 aa18.74■□□□□ 0.59
CLK3-227ENST00000570296 CYFIP2Q96F07 1278 aa18.74■□□□□ 0.59
CLK3-227ENST00000570296 LIN37Q96GY3 246 aaPredicted RBP18.74■□□□□ 0.59
CLK3-227ENST00000570296 LMLNQ96KR4 655 aa18.74■□□□□ 0.59
CLK3-227ENST00000570296 ZSCAN31Q96LW9 406 aaPredicted RBP18.74■□□□□ 0.59
CLK3-227ENST00000570296 CCDC39Q9UFE4 941 aa18.74■□□□□ 0.59
CLK3-227ENST00000570296 HBS1LQ9Y450 684 aaKnown RBP18.74■□□□□ 0.59
CLK3-227ENST00000570296 PCDHGA4Q9Y5G9 962 aa18.74■□□□□ 0.59
CLK3-227ENST00000570296 RP1L1Q8IWN7 2480 aaPredicted RBP18.74■□□□□ 0.59
CLK3-227ENST00000570296 SRPRAP08240 638 aaKnown RBP18.73■□□□□ 0.59
CLK3-227ENST00000570296 MZF1P28698 734 aaPredicted RBP18.73■□□□□ 0.59
CLK3-227ENST00000570296 AP3M2P53677 418 aa18.73■□□□□ 0.59
CLK3-227ENST00000570296 YWHAGP61981 247 aaKnown RBP eCLIP18.73■□□□□ 0.59
CLK3-227ENST00000570296 CDKN3Q16667 212 aa18.73■□□□□ 0.59
CLK3-227ENST00000570296 SKIDA1Q1XH10 827 aa18.73■□□□□ 0.59
CLK3-227ENST00000570296 KMT5BQ4FZB7 885 aa18.73■□□□□ 0.59
CLK3-227ENST00000570296 EFL1Q7Z2Z2 1120 aaKnown RBP18.73■□□□□ 0.59
CLK3-227ENST00000570296 XXYLT1Q8NBI6 393 aa18.73■□□□□ 0.59
CLK3-227ENST00000570296 WDR48Q8TAF3 677 aa18.73■□□□□ 0.59
CLK3-227ENST00000570296 EPSTI1Q96J88 318 aa18.73■□□□□ 0.59
CLK3-227ENST00000570296 DUSP16Q9BY84 665 aa18.73■□□□□ 0.59
CLK3-227ENST00000570296 OLA1Q9NTK5 396 aaKnown RBP18.73■□□□□ 0.59
CLK3-227ENST00000570296 CA5BQ9Y2D0 317 aa18.73■□□□□ 0.59
CLK3-227ENST00000570296 CPED1A4D0V7 1026 aa18.72■□□□□ 0.59
CLK3-227ENST00000570296 TTC34A8MYJ7 566 aa18.72■□□□□ 0.59
CLK3-227ENST00000570296 IL1BP01584 269 aa18.72■□□□□ 0.59
CLK3-227ENST00000570296 LIPCP11150 499 aa18.72■□□□□ 0.59
CLK3-227ENST00000570296 HOXD13P35453 343 aa18.72■□□□□ 0.59
CLK3-227ENST00000570296 SGSHP51688 502 aa18.72■□□□□ 0.59
CLK3-227ENST00000570296 RIPPLY3P57055 190 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms