RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 TMA16Q96EY4 203 aaKnown RBP9.57□□□□□ -0.88
VPS35-211ENST00000569950 CALR3Q96L12 384 aaKnown RBP9.57□□□□□ -0.88
VPS35-211ENST00000569950 RPRD1AQ96P16 312 aaPredicted RBP9.57□□□□□ -0.88
VPS35-211ENST00000569950 PSMB7Q99436 277 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 NCAPGQ9BPX3 1015 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 BBS2Q9BXC9 721 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 COL25A1Q9BXS0 654 aaPredicted RBP9.57□□□□□ -0.88
VPS35-211ENST00000569950 DHX35Q9H5Z1 703 aaKnown RBP9.57□□□□□ -0.88
VPS35-211ENST00000569950 C11orf16Q9NQ32 467 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 ARHGEF4Q9NR80 690 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 ARHGEF3Q9NR81 526 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 TMEM248Q9NWD8 314 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 SLC27A6Q9Y2P4 619 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 MTF2Q9Y483 593 aaPredicted RBP9.57□□□□□ -0.88
VPS35-211ENST00000569950 PIAS3Q9Y6X2 628 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 EML5Q05BV3 1969 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 A0A0D9SEW6 157 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 A0A1B0GVM2 712 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 TCAF2A6NFQ2 919 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 ZNF487B1APH4 448 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 K7EQS6 105 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 SRGAP2O75044 1071 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 ZMPSTE24O75844 475 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 CD160O95971 181 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 KRT7P08729 469 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 GLULP15104 373 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 RHOQP17081 205 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 ERCC2P18074 760 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 AMPD1P23109 780 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 MZF1P28698 734 aaPredicted RBP9.56□□□□□ -0.88
VPS35-211ENST00000569950 GJC1P36383 396 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 EIF2DP41214 584 aaKnown RBP9.56□□□□□ -0.88
VPS35-211ENST00000569950 GALK1P51570 392 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 CDH4P55283 916 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 LMAN2Q12907 356 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 CCINQ13939 588 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 MLF2Q15773 248 aaPredicted RBP9.56□□□□□ -0.88
VPS35-211ENST00000569950 ANO4Q32M45 955 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 ARL13BQ3SXY8 428 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 FUT11Q495W5 492 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 PPP6R3Q5H9R7 873 aaPredicted RBP9.56□□□□□ -0.88
VPS35-211ENST00000569950 ACBD5Q5T8D3 534 aaPredicted RBP9.56□□□□□ -0.88
VPS35-211ENST00000569950 CWF19L1Q69YN2 538 aaKnown RBP9.56□□□□□ -0.88
VPS35-211ENST00000569950 MFSD7Q6UXD7 560 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 TFAP2DQ7Z6R9 452 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 RALGPS2Q86X27 583 aaPredicted RBP9.56□□□□□ -0.88
VPS35-211ENST00000569950 VSIG1Q86XK7 387 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 PLD5Q8N7P1 536 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 RTL3Q8N8U3 475 aaKnown RBP9.56□□□□□ -0.88
VPS35-211ENST00000569950 NETO2Q8NC67 525 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 DDI1Q8WTU0 396 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 EDAQ92838 391 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 TBC1D31Q96DN5 1066 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 MYO19Q96H55 970 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 WDR24Q96S15 920 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 SLC2A11Q9BYW1 496 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 ZYG11BQ9C0D3 744 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 LRRC19Q9H756 370 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 STIM2Q9P246 746 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 SLC12A6Q9UHW9 1150 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 CA14Q9ULX7 337 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 ZKSCAN5Q9Y2L8 839 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 VPS13AQ96RL7 3174 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 CACNA1HO95180 2353 aa9.56□□□□□ -0.88
VPS35-211ENST00000569950 hCG_1818297A0A087WSY0 165 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 HAX1O00165 279 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 EEF2KO00418 725 aaKnown RBP9.55□□□□□ -0.88
VPS35-211ENST00000569950 ZSCAN12O43309 604 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 DCXO43602 365 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 SPOPO43791 374 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 CREB3O43889 395 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 CLDN11O75508 207 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 PYGMP11217 842 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 TARSP26639 723 aaKnown RBP9.55□□□□□ -0.88
VPS35-211ENST00000569950 HTR7P34969 479 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 PTPN7P35236 360 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 KIR2DL1P43626 348 aaPredicted RBP9.55□□□□□ -0.88
VPS35-211ENST00000569950 PLK1P53350 603 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 CDH6P55285 790 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 PFKPQ01813 784 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 PRKCQQ04759 706 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 KDSRQ06136 332 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 SLC10A2Q12908 348 aaPredicted RBP9.55□□□□□ -0.88
VPS35-211ENST00000569950 GAS6Q14393 721 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 PDK2Q15119 407 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 PON2Q15165 354 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 PTPRNQ16849 979 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 ANKRD20A8PQ5CZ79 823 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 RABGAP1LQ5R372 815 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 TTC39BQ5VTQ0 682 aaPredicted RBP9.55□□□□□ -0.88
VPS35-211ENST00000569950 NCBP2-AS2Q69YL0 99 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 SLC9A4Q6AI14 798 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 PKN3Q6P5Z2 889 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 SPOCD1Q6ZMY3 1216 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 TRIM67Q6ZTA4 783 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 TPRG1Q6ZUI0 275 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 NYAP1Q6ZVC0 841 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 APCDD1Q8J025 514 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 SIX5Q8N196 739 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 UMODL1-AS1Q8N2C9 162 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms