RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 BPIFA3Q9BQP9 254 aa18.98■□□□□ 0.63
CLN3-214ENST00000565140 EDEM2Q9BV94 578 aa18.98■□□□□ 0.63
CLN3-214ENST00000565140 NAT10Q9H0A0 1025 aaKnown RBP18.98■□□□□ 0.63
CLN3-214ENST00000565140 WSB2Q9NYS7 404 aaPredicted RBP18.98■□□□□ 0.63
CLN3-214ENST00000565140 RRN3Q9NYV6 651 aa18.98■□□□□ 0.63
CLN3-214ENST00000565140 VANGL2Q9ULK5 521 aa18.98■□□□□ 0.63
CLN3-214ENST00000565140 DAAM1Q9Y4D1 1078 aa18.98■□□□□ 0.63
CLN3-214ENST00000565140 KNL1Q8NG31 2342 aa18.98■□□□□ 0.63
CLN3-214ENST00000565140 TEX33O43247 280 aa18.97■□□□□ 0.63
CLN3-214ENST00000565140 NDUFS2O75306 463 aa18.97■□□□□ 0.63
CLN3-214ENST00000565140 C7P10643 843 aa18.97■□□□□ 0.63
CLN3-214ENST00000565140 CENPCQ03188 943 aa18.97■□□□□ 0.63
CLN3-214ENST00000565140 PLEKHG6Q3KR16 790 aa18.97■□□□□ 0.63
CLN3-214ENST00000565140 SLC25A52Q3SY17 297 aa18.97■□□□□ 0.63
CLN3-214ENST00000565140 TRIM61Q5EBN2 209 aa18.97■□□□□ 0.63
CLN3-214ENST00000565140 PEAR1Q5VY43 1037 aaPredicted RBP18.97■□□□□ 0.63
CLN3-214ENST00000565140 PHLDB2Q86SQ0 1253 aa18.97■□□□□ 0.63
CLN3-214ENST00000565140 PGAP3Q96FM1 320 aaPredicted RBP18.97■□□□□ 0.63
CLN3-214ENST00000565140 HSPA12BQ96MM6 686 aa18.97■□□□□ 0.63
CLN3-214ENST00000565140 TKTL2Q9H0I9 626 aa18.97■□□□□ 0.63
CLN3-214ENST00000565140 SIK2Q9H0K1 926 aa18.97■□□□□ 0.63
CLN3-214ENST00000565140 WDCPQ9H6R7 721 aa18.97■□□□□ 0.63
CLN3-214ENST00000565140 TMPRSS4Q9NRS4 437 aa18.97■□□□□ 0.63
CLN3-214ENST00000565140 ARHGEF38Q9NXL2 777 aa18.97■□□□□ 0.63
CLN3-214ENST00000565140 SUN2Q9UH99 717 aa18.97■□□□□ 0.63
CLN3-214ENST00000565140 EVLQ9UI08 416 aaPredicted RBP18.97■□□□□ 0.63
CLN3-214ENST00000565140 STAP1Q9ULZ2 295 aa18.97■□□□□ 0.63
CLN3-214ENST00000565140 ERVW-1Q9UQF0 538 aa18.97■□□□□ 0.63
CLN3-214ENST00000565140 SNX10Q9Y5X0 201 aa18.97■□□□□ 0.63
CLN3-214ENST00000565140 PCDH15Q96QU1 1955 aa18.97■□□□□ 0.63
CLN3-214ENST00000565140 IGLV3-19P01714 112 aa18.96■□□□□ 0.63
CLN3-214ENST00000565140 ASLP04424 464 aa18.96■□□□□ 0.63
CLN3-214ENST00000565140 MMP8P22894 467 aa18.96■□□□□ 0.63
CLN3-214ENST00000565140 MZF1P28698 734 aaPredicted RBP18.96■□□□□ 0.63
CLN3-214ENST00000565140 RPS14P62263 151 aaKnown RBP18.96■□□□□ 0.63
CLN3-214ENST00000565140 DEUP1Q05D60 604 aa18.96■□□□□ 0.63
CLN3-214ENST00000565140 RABGAP1LQ5R372 815 aa18.96■□□□□ 0.63
CLN3-214ENST00000565140 TTC39BQ5VTQ0 682 aaPredicted RBP18.96■□□□□ 0.63
CLN3-214ENST00000565140 CXorf57Q6NSI4 855 aaKnown RBP18.96■□□□□ 0.63
CLN3-214ENST00000565140 BNIPLQ7Z465 357 aa18.96■□□□□ 0.63
CLN3-214ENST00000565140 MSANTD4Q8NCY6 345 aa18.96■□□□□ 0.63
CLN3-214ENST00000565140 OR52K2Q8NGK3 314 aa18.96■□□□□ 0.63
CLN3-214ENST00000565140 CFAP57Q96MR6 1250 aa18.96■□□□□ 0.63
CLN3-214ENST00000565140 RPRD1AQ96P16 312 aaPredicted RBP18.96■□□□□ 0.63
CLN3-214ENST00000565140 FUCA2Q9BTY2 467 aa18.96■□□□□ 0.63
CLN3-214ENST00000565140 GPR174Q9BXC1 333 aa18.96■□□□□ 0.63
CLN3-214ENST00000565140 SLCO3A1Q9UIG8 710 aa18.96■□□□□ 0.63
CLN3-214ENST00000565140 A0A1B0GVM2 712 aa18.95■□□□□ 0.62
CLN3-214ENST00000565140 TCAF2A6NFQ2 919 aa18.95■□□□□ 0.62
CLN3-214ENST00000565140 C4orf47A7E2U8 309 aa18.95■□□□□ 0.62
CLN3-214ENST00000565140 TTC34A8MYJ7 566 aa18.95■□□□□ 0.62
CLN3-214ENST00000565140 CDX4O14627 284 aaPredicted RBP18.95■□□□□ 0.62
CLN3-214ENST00000565140 SIN3BO75182 1162 aa18.95■□□□□ 0.62
CLN3-214ENST00000565140 MOCS3O95396 460 aa18.95■□□□□ 0.62
CLN3-214ENST00000565140 F9P00740 461 aa18.95■□□□□ 0.62
CLN3-214ENST00000565140 ACADMP11310 421 aa18.95■□□□□ 0.62
CLN3-214ENST00000565140 UNGP13051 313 aaPredicted RBP18.95■□□□□ 0.62
CLN3-214ENST00000565140 PDGFRAP16234 1089 aa18.95■□□□□ 0.62
CLN3-214ENST00000565140 OXTRP30559 389 aa18.95■□□□□ 0.62
CLN3-214ENST00000565140 ST8SIA6P61647 398 aa18.95■□□□□ 0.62
CLN3-214ENST00000565140 ECT2LQ008S8 904 aa18.95■□□□□ 0.62
CLN3-214ENST00000565140 MTA1Q13330 715 aa18.95■□□□□ 0.62
CLN3-214ENST00000565140 C5orf22Q49AR2 442 aa18.95■□□□□ 0.62
CLN3-214ENST00000565140 BRMS1LQ5PSV4 323 aa18.95■□□□□ 0.62
CLN3-214ENST00000565140 IL31Q6EBC2 164 aa18.95■□□□□ 0.62
CLN3-214ENST00000565140 SLC23A3Q6PIS1 610 aa18.95■□□□□ 0.62
CLN3-214ENST00000565140 SND1Q7KZF4 910 aaKnown RBP eCLIP18.95■□□□□ 0.621e-7■■■□□ 15.8
CLN3-214ENST00000565140 FAM124AQ86V42 546 aa18.95■□□□□ 0.62
CLN3-214ENST00000565140 EMC1Q8N766 993 aa18.95■□□□□ 0.62
CLN3-214ENST00000565140 RPL10LQ96L21 214 aaKnown RBP18.95■□□□□ 0.62
CLN3-214ENST00000565140 C11orf70Q9BRQ4 267 aa18.95■□□□□ 0.62
CLN3-214ENST00000565140 RTN4Q9NQC3 1192 aaKnown RBP18.95■□□□□ 0.62
CLN3-214ENST00000565140 FSCN3Q9NQT6 498 aa18.95■□□□□ 0.62
CLN3-214ENST00000565140 METTL5Q9NRN9 209 aaKnown RBP18.95■□□□□ 0.62
CLN3-214ENST00000565140 SMTNL1A8MU46 457 aa18.94■□□□□ 0.62
CLN3-214ENST00000565140 CNTN5O94779 1100 aa18.94■□□□□ 0.62
CLN3-214ENST00000565140 GJB6O95452 261 aa18.94■□□□□ 0.62
CLN3-214ENST00000565140 SRPRAP08240 638 aaKnown RBP18.94■□□□□ 0.62
CLN3-214ENST00000565140 MAOBP27338 520 aa18.94■□□□□ 0.62
CLN3-214ENST00000565140 STK19P49842 368 aaPredicted RBP18.94■□□□□ 0.62
CLN3-214ENST00000565140 ZNF165P49910 485 aa18.94■□□□□ 0.62
CLN3-214ENST00000565140 PLK1P53350 603 aa18.94■□□□□ 0.62
CLN3-214ENST00000565140 PTP4A2Q12974 167 aa18.94■□□□□ 0.62
CLN3-214ENST00000565140 ARID5BQ14865 1188 aa18.94■□□□□ 0.62
CLN3-214ENST00000565140 IQCB1Q15051 598 aa18.94■□□□□ 0.62
CLN3-214ENST00000565140 HNRNPA1L2Q32P51 320 aaKnown RBP18.94■□□□□ 0.62
CLN3-214ENST00000565140 RAB6CQ53S08 254 aa18.94■□□□□ 0.62
CLN3-214ENST00000565140 ARTNQ5T4W7 220 aa18.94■□□□□ 0.62
CLN3-214ENST00000565140 C9orf64Q5T6V5 341 aa18.94■□□□□ 0.62
CLN3-214ENST00000565140 TRIM72Q6ZMU5 477 aa18.94■□□□□ 0.62
CLN3-214ENST00000565140 ARCQ7LC44 396 aa18.94■□□□□ 0.62
CLN3-214ENST00000565140 ZNF683Q8IZ20 524 aa18.94■□□□□ 0.62
CLN3-214ENST00000565140 KDM1BQ8NB78 822 aa18.94■□□□□ 0.62
CLN3-214ENST00000565140 ALG14Q96F25 216 aa18.94■□□□□ 0.62
CLN3-214ENST00000565140 NUP58Q9BVL2 599 aa18.94■□□□□ 0.62
CLN3-214ENST00000565140 RAB6CQ9H0N0 254 aa18.94■□□□□ 0.62
CLN3-214ENST00000565140 PCNX2A6NKB5 2137 aa18.94■□□□□ 0.62
CLN3-214ENST00000565140 CFIP05156 583 aa18.93■□□□□ 0.62
CLN3-214ENST00000565140 HOXD12P35452 270 aa18.93■□□□□ 0.62
CLN3-214ENST00000565140 DPP6P42658 865 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms