RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ZSCAN5DPP0CG00 497 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 AMPD1P23109 780 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 ALDH3A1P30838 453 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 ATP5C1P36542 298 aaKnown RBP7.71□□□□□ -1.18
VPS39-204ENST00000561818 NDUFV1P49821 464 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 AFF1P51825 1210 aaKnown RBP7.71□□□□□ -1.18
VPS39-204ENST00000561818 KPNA2P52292 529 aaKnown RBP7.71□□□□□ -1.18
VPS39-204ENST00000561818 EPHB3P54753 998 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 GDF10P55107 478 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 DSG1Q02413 1049 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 FAAP100Q0VG06 881 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 CDH17Q12864 832 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 MPP3Q13368 585 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 PPIGQ13427 754 aaKnown RBP eCLIP7.71□□□□□ -1.183e-6■■■■□ 19.5
VPS39-204ENST00000561818 HNRNPDQ14103 355 aaKnown RBP7.71□□□□□ -1.18
VPS39-204ENST00000561818 ITIH4Q14624 930 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 LLGL1Q15334 1064 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 PSMD5Q16401 504 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 CA9Q16790 459 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 PAN2Q504Q3 1202 aaKnown RBP7.71□□□□□ -1.18
VPS39-204ENST00000561818 RALGPS1Q5JS13 557 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 SPOUT1Q5T280 376 aaKnown RBP7.71□□□□□ -1.18
VPS39-204ENST00000561818 STXBP5Q5T5C0 1151 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 OTUD1Q5VV17 481 aaPredicted RBP7.71□□□□□ -1.18
VPS39-204ENST00000561818 STEAP4Q687X5 459 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 CCDC149Q6ZUS6 474 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 PID1Q7Z2X4 250 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 CPLX4Q7Z7G2 160 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 TRABD2AQ86V40 505 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 CACNA2D3Q8IZS8 1091 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 UMODL1-AS1Q8N2C9 162 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 ELMOD1Q8N336 334 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 KIAA1958Q8N8K9 716 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 COLGALT1Q8NBJ5 622 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 LEMD2Q8NC56 503 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 FBXO22Q8NEZ5 403 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 OR2W6PQ8NHA6 318 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 ZNF461Q8TAF7 563 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 CALML6Q8TD86 181 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 EPS8L3Q8TE67 593 aaKnown RBP7.71□□□□□ -1.18
VPS39-204ENST00000561818 HASPINQ8TF76 798 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 USP13Q92995 863 aaPredicted RBP7.71□□□□□ -1.18
VPS39-204ENST00000561818 TOP1MTQ969P6 601 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 SLC39A13Q96H72 371 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 IGSF21Q96ID5 467 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 FCRL2Q96LA5 508 aaPredicted RBP7.71□□□□□ -1.18
VPS39-204ENST00000561818 C9orf72Q96LT7 481 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 MYRFLQ96LU7 910 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 MAGEB18Q96M61 343 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 GCNAQ96QF7 691 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 XPO6Q96QU8 1125 aaKnown RBP7.71□□□□□ -1.18
VPS39-204ENST00000561818 SRPK1Q96SB4 655 aaKnown RBP7.71□□□□□ -1.18
VPS39-204ENST00000561818 PAFAH2Q99487 392 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 SIKE1Q9BRV8 207 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 NACA2Q9H009 215 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 ETNK1Q9HBU6 452 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 MRM3Q9HC36 420 aaKnown RBP7.71□□□□□ -1.18
VPS39-204ENST00000561818 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.71□□□□□ -1.18
VPS39-204ENST00000561818 GPATCH2LQ9NWQ4 482 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 MARCH5Q9NX47 278 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 EURLQ9NYK6 297 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 SPG21Q9NZD8 308 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 TRPM5Q9NZQ8 1165 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 MARCH2Q9P0N8 246 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 RSPH14Q9UHP6 348 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 LZTS1Q9Y250 596 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 PCDHA11Q9Y5I1 949 aa7.71□□□□□ -1.18
VPS39-204ENST00000561818 SYNJ2BP-COX16A0A087WUM0 186 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 FAM237BA0A1B0GVD1 139 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 TMEM120BA0PK00 339 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 E9PAM4 449 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 F5H5T6 163 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 HCRTO43612 131 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 TIMM44O43615 452 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 CACNG3O60359 315 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 PAGE1O75459 146 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 USP1O94782 785 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 ALDH1A2O94788 518 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 TMEM63AO94886 807 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 IGLV3-27P01718 113 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 MT-ND3P03897 115 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 APOA4P06727 396 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 TIE1P35590 1138 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 ELK3P41970 407 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 TLE2Q04725 743 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 UBE3AQ05086 875 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 RAB33AQ14088 237 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 TMED2Q15363 201 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 LONRF1Q17RB8 773 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 TRIM60Q495X7 471 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 HECTD3Q5T447 861 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 FYB2Q5VWT5 728 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 RWDD4Q6NW29 188 aaKnown RBP7.7□□□□□ -1.18
VPS39-204ENST00000561818 PSRC1Q6PGN9 363 aaPredicted RBP7.7□□□□□ -1.18
VPS39-204ENST00000561818 NPNTQ6UXI9 565 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 TIFABQ6ZNK6 161 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 MARK2Q7KZI7 788 aaKnown RBP7.7□□□□□ -1.18
VPS39-204ENST00000561818 CHST9Q7L1S5 443 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 GPRIN1Q7Z2K8 1008 aa7.7□□□□□ -1.18
VPS39-204ENST00000561818 DDX53Q86TM3 631 aaKnown RBP7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms