RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 KCNV2Q8TDN2 545 aa10.37□□□□□ -0.75
USP3-216ENST00000559873 IGSF8Q969P0 613 aa10.37□□□□□ -0.75
USP3-216ENST00000559873 ACDQ96AP0 544 aa10.37□□□□□ -0.75
USP3-216ENST00000559873 ZNF670Q9BS34 389 aa10.37□□□□□ -0.75
USP3-216ENST00000559873 CALN1Q9BXU9 219 aa10.37□□□□□ -0.75
USP3-216ENST00000559873 KCNF1Q9H3M0 494 aa10.37□□□□□ -0.75
USP3-216ENST00000559873 LZTFL1Q9NQ48 299 aa10.37□□□□□ -0.75
USP3-216ENST00000559873 TMPRSS4Q9NRS4 437 aa10.37□□□□□ -0.75
USP3-216ENST00000559873 ABCB8Q9NUT2 735 aa10.37□□□□□ -0.75
USP3-216ENST00000559873 TMEM248Q9NWD8 314 aa10.37□□□□□ -0.75
USP3-216ENST00000559873 KIAA1522Q9P206 1035 aaPredicted RBP10.37□□□□□ -0.75
USP3-216ENST00000559873 GGA2Q9UJY4 613 aa10.37□□□□□ -0.75
USP3-216ENST00000559873 FBXO10Q9UK96 956 aa10.37□□□□□ -0.75
USP3-216ENST00000559873 GUCA1BQ9UMX6 200 aa10.37□□□□□ -0.75
USP3-216ENST00000559873 ALG6Q9Y672 507 aa10.37□□□□□ -0.75
USP3-216ENST00000559873 MUC3AQ02505 3323 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 KIAA1549LQ6ZVL6 1849 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 LRRD1A4D1F6 860 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 FAM170BA6NMN3 283 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 MIF4GDA9UHW6 222 aaKnown RBP10.36□□□□□ -0.75
USP3-216ENST00000559873 NPC1O15118 1278 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 TIMM44O43615 452 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 RAMP2O60895 175 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 ATG13O75143 517 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 ASLP04424 464 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 TCF4P15884 667 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 AOC1P19801 751 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 TARSP26639 723 aaKnown RBP10.36□□□□□ -0.75
USP3-216ENST00000559873 IL1R2P27930 398 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 HLA-FP30511 346 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 CETN2P41208 172 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 TNFRSF4P43489 277 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 RPS9P46781 194 aaKnown RBP10.36□□□□□ -0.75
USP3-216ENST00000559873 SLC6A11P48066 632 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 GALK1P51570 392 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 TAS2R40P59535 323 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 SULT2A1Q06520 285 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 CCINQ13939 588 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 HSF5Q4G112 596 aaPredicted RBP10.36□□□□□ -0.75
USP3-216ENST00000559873 RNF219Q5W0B1 726 aaPredicted RBP10.36□□□□□ -0.75
USP3-216ENST00000559873 FSTL4Q6MZW2 842 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 CYP4V2Q6ZWL3 525 aaPredicted RBP10.36□□□□□ -0.75
USP3-216ENST00000559873 BMP8AQ7Z5Y6 402 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 TFAP2DQ7Z6R9 452 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 CIR1Q86X95 450 aaPredicted RBP10.36□□□□□ -0.75
USP3-216ENST00000559873 VSIG1Q86XK7 387 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 PYROXD2Q8N2H3 581 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 TRIM58Q8NG06 486 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.36□□□□□ -0.75
USP3-216ENST00000559873 PBXIP1Q96AQ6 731 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 CHFRQ96EP1 664 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 RBM41Q96IZ5 413 aaKnown RBP10.36□□□□□ -0.75
USP3-216ENST00000559873 KCTD15Q96SI1 283 aaPredicted RBP10.36□□□□□ -0.75
USP3-216ENST00000559873 C2orf49Q9BVC5 232 aaPredicted RBP10.36□□□□□ -0.75
USP3-216ENST00000559873 FOXQ1Q9C009 403 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 CIPCQ9C0C6 399 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 MUC3BQ9H195 1237 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 PRDM16Q9HAZ2 1276 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 PCDH18Q9HCL0 1135 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 MPP6Q9NZW5 540 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 VPS28Q9UK41 221 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 AMFRQ9UKV5 643 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 TBC1D30Q9Y2I9 924 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 SIT1Q9Y3P8 196 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 SNX10Q9Y5X0 201 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 DUSP10Q9Y6W6 482 aa10.36□□□□□ -0.75
USP3-216ENST00000559873 ILVBLA1L0T0 632 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 GRID2IPA4D2P6 1211 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 WASH4PA8MWX3 477 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 PRR33A8MZF0 331 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 ZNF487B1APH4 448 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 FAM72CH0Y354 149 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 PALMO75781 387 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 CNTN5O94779 1100 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 EGFP01133 1207 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 ATP5BP06576 529 aaKnown RBP10.35□□□□□ -0.75
USP3-216ENST00000559873 CISD3P0C7P0 127 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 TNNT1P13805 278 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 GOT1P17174 413 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 POLR2EP19388 210 aaKnown RBP10.35□□□□□ -0.75
USP3-216ENST00000559873 CD72P21854 359 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 CD70P32970 193 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 CTNNA1P35221 906 aaKnown RBP10.35□□□□□ -0.75
USP3-216ENST00000559873 CLCN5P51795 746 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 GEMIN4P57678 1058 aaKnown RBP10.35□□□□□ -0.75
USP3-216ENST00000559873 ST8SIA6P61647 398 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 MRPS21P82921 87 aaKnown RBP10.35□□□□□ -0.75
USP3-216ENST00000559873 LMAN2Q12907 356 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 CA9Q16790 459 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 PLEKHG6Q3KR16 790 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 PARP15Q460N3 678 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 ALFQ53S48 1182 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 PITRM1Q5JRX3 1037 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 IER5LQ5T953 404 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 FAM72AQ5TYM5 149 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 CWF19L1Q69YN2 538 aaKnown RBP10.35□□□□□ -0.75
USP3-216ENST00000559873 ASTLQ6HA08 431 aaPredicted RBP10.35□□□□□ -0.75
USP3-216ENST00000559873 SDE2Q6IQ49 451 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 FAM72DQ6L9T8 149 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 CXorf57Q6NSI4 855 aaKnown RBP10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms