RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 LOC100653049A0A140TA62 436 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 GOLGA8OA6NCC3 632 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 GOLGA8NF8WBI6 632 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 KRT34O76011 436 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 FBXO21O94952 628 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 CLPTM1O96005 669 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 CAPNS1P04632 268 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 SMIM18P0DKX4 95 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 ARRB2P32121 409 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 CSE1LP55060 971 aaKnown RBP16.66■□□□□ 0.26
SHMT2-231ENST00000557433 SESN2P58004 480 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-231ENST00000557433 CREB5Q02930 508 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 RFTN1Q14699 578 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-231ENST00000557433 CNGA3Q16281 694 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 USP41Q3LFD5 358 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 TCHHL1Q5QJ38 904 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-231ENST00000557433 BORAQ6PGQ7 559 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 B3GNT6Q6ZMB0 384 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 BNC2Q6ZN30 1099 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-231ENST00000557433 SLC7A14Q8TBB6 771 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 CNOT11Q9UKZ1 510 aaKnown RBP16.66■□□□□ 0.26
SHMT2-231ENST00000557433 PHF24Q9UPV7 400 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 KAT6AQ92794 2004 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 MGAMO43451 1857 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 RNF103O00237 685 aa16.65■□□□□ 0.26
SHMT2-231ENST00000557433 TIMM44O43615 452 aa16.65■□□□□ 0.26
SHMT2-231ENST00000557433 ZBTB14O43829 449 aa16.65■□□□□ 0.26
SHMT2-231ENST00000557433 TMCC1O94876 653 aa16.65■□□□□ 0.26
SHMT2-231ENST00000557433 ADGRE1Q14246 886 aa16.65■□□□□ 0.26
SHMT2-231ENST00000557433 AMHR2Q16671 573 aa16.65■□□□□ 0.26
SHMT2-231ENST00000557433 ZNF484Q5JVG2 852 aa16.65■□□□□ 0.26
SHMT2-231ENST00000557433 FBXL19Q6PCT2 694 aa16.65■□□□□ 0.26
SHMT2-231ENST00000557433 CLEC14AQ86T13 490 aa16.65■□□□□ 0.26
SHMT2-231ENST00000557433 CDR2LQ86X02 465 aaPredicted RBP16.65■□□□□ 0.26
SHMT2-231ENST00000557433 SCUBE3Q8IX30 993 aa16.65■□□□□ 0.26
SHMT2-231ENST00000557433 UNC5BQ8IZJ1 945 aa16.65■□□□□ 0.26
SHMT2-231ENST00000557433 DCLK2Q8N568 766 aa16.65■□□□□ 0.26
SHMT2-231ENST00000557433 TDRD5Q8NAT2 981 aaKnown RBP16.65■□□□□ 0.26
SHMT2-231ENST00000557433 SHKBP1Q8TBC3 707 aa16.65■□□□□ 0.26
SHMT2-231ENST00000557433 IRGQQ8WZA9 623 aa16.65■□□□□ 0.26
SHMT2-231ENST00000557433 MINDY3Q9H8M7 445 aa16.65■□□□□ 0.26
SHMT2-231ENST00000557433 HACD3Q9P035 362 aa16.65■□□□□ 0.26
SHMT2-231ENST00000557433 ANKRD6Q9Y2G4 727 aa16.65■□□□□ 0.26
SHMT2-231ENST00000557433 RAP2CQ9Y3L5 183 aa16.65■□□□□ 0.26
SHMT2-231ENST00000557433 PSAT1Q9Y617 370 aa16.65■□□□□ 0.26
SHMT2-231ENST00000557433 RAD54BQ9Y620 910 aa16.65■□□□□ 0.26
SHMT2-231ENST00000557433 ARHGAP10A1A4S6 786 aa16.64■□□□□ 0.26
SHMT2-231ENST00000557433 MAGEB16A2A368 324 aa16.64■□□□□ 0.26
SHMT2-231ENST00000557433 ERI2A8K979 691 aaKnown RBP16.64■□□□□ 0.26
SHMT2-231ENST00000557433 H0YJX3 145 aa16.64■□□□□ 0.26
SHMT2-231ENST00000557433 HDAC3O15379 428 aa16.64■□□□□ 0.26
SHMT2-231ENST00000557433 DNAJA2O60884 412 aa16.64■□□□□ 0.26
SHMT2-231ENST00000557433 ASLP04424 464 aa16.64■□□□□ 0.26
SHMT2-231ENST00000557433 PIK3R1P27986 724 aa16.64■□□□□ 0.26
SHMT2-231ENST00000557433 IFRD2Q12894 506 aaPredicted RBP16.64■□□□□ 0.26
SHMT2-231ENST00000557433 TLR1Q15399 786 aa16.64■□□□□ 0.26
SHMT2-231ENST00000557433 LY6KQ17RY6 165 aa16.64■□□□□ 0.26
SHMT2-231ENST00000557433 VWA5B1Q5TIE3 1220 aa16.64■□□□□ 0.26
SHMT2-231ENST00000557433 SATL1Q86VE3 508 aa16.64■□□□□ 0.26
SHMT2-231ENST00000557433 TRIM50Q86XT4 487 aa16.64■□□□□ 0.26
SHMT2-231ENST00000557433 APOBEC3FQ8IUX4 373 aaKnown RBP16.64■□□□□ 0.26
SHMT2-231ENST00000557433 PGAM4Q8N0Y7 254 aa16.64■□□□□ 0.26
SHMT2-231ENST00000557433 ZNF781Q8N8C0 355 aa16.64■□□□□ 0.26
SHMT2-231ENST00000557433 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.64■□□□□ 0.26
SHMT2-231ENST00000557433 LENG8Q96PV6 779 aaPredicted RBP16.64■□□□□ 0.26
SHMT2-231ENST00000557433 MRPL40Q9NQ50 206 aaKnown RBP16.64■□□□□ 0.26
SHMT2-231ENST00000557433 SYBUQ9NX95 663 aa16.64■□□□□ 0.26
SHMT2-231ENST00000557433 CIDEBQ9UHD4 219 aa16.64■□□□□ 0.26
SHMT2-231ENST00000557433 RPS6KL1Q9Y6S9 549 aa16.64■□□□□ 0.26
SHMT2-231ENST00000557433 CAPN8A6NHC0 703 aa16.64■□□□□ 0.25
SHMT2-231ENST00000557433 G3V2L1 256 aa16.64■□□□□ 0.25
SHMT2-231ENST00000557433 MATN2O00339 956 aa16.64■□□□□ 0.25
SHMT2-231ENST00000557433 TADA2AO75478 443 aa16.64■□□□□ 0.25
SHMT2-231ENST00000557433 BST2Q10589 180 aaKnown RBP16.64■□□□□ 0.25
SHMT2-231ENST00000557433 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.64■□□□□ 0.25
SHMT2-231ENST00000557433 PPM1JQ5JR12 505 aa16.64■□□□□ 0.25
SHMT2-231ENST00000557433 ARMC3Q5W041 872 aa16.64■□□□□ 0.25
SHMT2-231ENST00000557433 ATG14Q6ZNE5 492 aa16.64■□□□□ 0.25
SHMT2-231ENST00000557433 TICAM1Q8IUC6 712 aa16.64■□□□□ 0.25
SHMT2-231ENST00000557433 C12orf29Q8N999 325 aa16.64■□□□□ 0.25
SHMT2-231ENST00000557433 HIPK4Q8NE63 616 aa16.64■□□□□ 0.25
SHMT2-231ENST00000557433 P2RY11Q96G91 374 aa16.64■□□□□ 0.25
SHMT2-231ENST00000557433 MAML3Q96JK9 1138 aa16.64■□□□□ 0.25
SHMT2-231ENST00000557433 GCNAQ96QF7 691 aa16.64■□□□□ 0.25
SHMT2-231ENST00000557433 NSMCE4AQ9NXX6 385 aa16.64■□□□□ 0.25
SHMT2-231ENST00000557433 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.64■□□□□ 0.25
SHMT2-231ENST00000557433 DMTF1Q9Y222 760 aa16.64■□□□□ 0.25
SHMT2-231ENST00000557433 A0A0G2JMZ2 1700 aa16.64■□□□□ 0.25
SHMT2-231ENST00000557433 LRRC37A2A6NM11 1700 aa16.64■□□□□ 0.25
SHMT2-231ENST00000557433 E9PBE3 544 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 AP3B1O00203 1094 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 KLHL41O60662 606 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 EGFRP00533 1210 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 IQCF3P0C7M6 154 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 CYP2C9P11712 490 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 PMLP29590 882 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 NUDT2P50583 147 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 CLCN3P51790 818 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 BCAT1P54687 386 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 PRKAA1Q13131 559 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms