RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 GXYLT2A0PJZ3 443 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 KIR2DS3K7RE56 304 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 M0QYT0 321 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 RHODO00212 210 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 DHHO43323 396 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 GRID2O43424 1007 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 PPP6R2O75170 966 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 KAT7O95251 611 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 CHRNB1P11230 501 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 PEPDP12955 493 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 NPPBP16860 134 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 KLRK1P26718 216 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 GRK5P34947 590 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 TECP42680 631 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 TBX4P57082 545 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 SHC2P98077 582 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 BTKQ06187 659 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 PTGR1Q14914 329 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 C6orf10Q5SRN2 563 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 TRABD2AQ86V40 505 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 GATAD2AQ86YP4 633 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 SPATA2LQ8IUW3 424 aaPredicted RBP4.28□□□□□ -1.72
SCFD1-216ENST00000555550 DDIASQ8IXT1 998 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 NRSN1Q8IZ57 195 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 IQCF1Q8N6M8 205 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 OIT3Q8WWZ8 545 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 ATP2A3Q93084 1043 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 MIB2Q96AX9 1013 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 EME1Q96AY2 570 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 MSI2Q96DH6 328 aaKnown RBP4.28□□□□□ -1.72
SCFD1-216ENST00000555550 SGCZQ96LD1 299 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 ZNF347Q96SE7 839 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 OSBPL5Q9H0X9 879 aaPredicted RBP4.28□□□□□ -1.72
SCFD1-216ENST00000555550 SFXN1Q9H9B4 322 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 KCNK9Q9NPC2 374 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 FZD3Q9NPG1 666 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 SELENONQ9NZV5 590 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 TRPC5Q9UL62 973 aaPredicted RBP4.28□□□□□ -1.72
SCFD1-216ENST00000555550 NFU1Q9UMS0 254 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 LAMP3Q9UQV4 416 aa4.28□□□□□ -1.72
SCFD1-216ENST00000555550 TBC1D3DA0A087WVF3 549 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 TBC1D3IA0A087WXS9 549 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 TBC1D3EA0A087X179 549 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 TBC1D3KA0A087X1G2 549 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 TBC1D3BA6NDS4 549 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 TBC1D3FA6NER0 549 aaPredicted RBP4.27□□□□□ -1.73
SCFD1-216ENST00000555550 C3orf70A6NLC5 250 aaPredicted RBP4.27□□□□□ -1.73
SCFD1-216ENST00000555550 KIF28PB7ZC32 967 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 TBC1D3LB9A6J9 549 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 ACOT8O14734 319 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 NKX2-8O15522 239 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 DNPH1O43598 174 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 RPP40O75818 363 aaKnown RBP4.27□□□□□ -1.73
SCFD1-216ENST00000555550 CAMTA2O94983 1202 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 ALDOCP09972 364 aaKnown RBP4.27□□□□□ -1.73
SCFD1-216ENST00000555550 TBC1D3HP0C7X1 549 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 FGF3P11487 239 aaPredicted RBP4.27□□□□□ -1.73
SCFD1-216ENST00000555550 POLD2P49005 469 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 TAS2R50P59544 299 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 TBC1D3GQ6DHY5 549 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 TBC1D3CQ6IPX1 549 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 ZNF329Q86UD4 541 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 TBC1D3Q8IZP1 549 aaPredicted RBP4.27□□□□□ -1.73
SCFD1-216ENST00000555550 OR52N4Q8NGI2 321 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 LPAR1Q92633 364 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 NLRC4Q9NPP4 1024 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 SLC52A1Q9NWF4 448 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 IGSF9Q9P2J2 1179 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 CDC23Q9UJX2 597 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 SLC12A4Q9UP95 1085 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 TNFSF13BQ9Y275 285 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 NOTCH3Q9UM47 2321 aa4.27□□□□□ -1.73
SCFD1-216ENST00000555550 LOC105369274A0A096LPK9 316 aa4.26□□□□□ -1.73
SCFD1-216ENST00000555550 LOC102723532A0A0G2JNH3 316 aa4.26□□□□□ -1.73
SCFD1-216ENST00000555550 A6NNC1 897 aa4.26□□□□□ -1.73
SCFD1-216ENST00000555550 PRSS47A8MTI9 375 aa4.26□□□□□ -1.73
SCFD1-216ENST00000555550 ASNA1O43681 348 aa4.26□□□□□ -1.73
SCFD1-216ENST00000555550 PLIN1O60240 522 aa4.26□□□□□ -1.73
SCFD1-216ENST00000555550 IFIT2P09913 472 aaKnown RBP4.26□□□□□ -1.73
SCFD1-216ENST00000555550 TBXAS1P24557 533 aaPredicted RBP4.26□□□□□ -1.73
SCFD1-216ENST00000555550 RPL15P61313 204 aaKnown RBP4.26□□□□□ -1.73
SCFD1-216ENST00000555550 TLE3Q04726 772 aa4.26□□□□□ -1.73
SCFD1-216ENST00000555550 LTBQ06643 244 aa4.26□□□□□ -1.73
SCFD1-216ENST00000555550 GALNT3Q14435 633 aa4.26□□□□□ -1.73
SCFD1-216ENST00000555550 PIK3CD-AS1Q5SR53 167 aa4.26□□□□□ -1.73
SCFD1-216ENST00000555550 CCSAPQ6IQ19 270 aaPredicted RBP4.26□□□□□ -1.73
SCFD1-216ENST00000555550 HMBOX1Q6NT76 420 aa4.26□□□□□ -1.73
SCFD1-216ENST00000555550 FBXL22Q6P050 247 aa4.26□□□□□ -1.73
SCFD1-216ENST00000555550 GGT6Q6P531 493 aa4.26□□□□□ -1.73
SCFD1-216ENST00000555550 TMEM88Q6PEY1 159 aa4.26□□□□□ -1.73
SCFD1-216ENST00000555550 OR4N4Q8N0Y3 316 aa4.26□□□□□ -1.73
SCFD1-216ENST00000555550 HMGB4Q8WW32 186 aa4.26□□□□□ -1.73
SCFD1-216ENST00000555550 ELAC2Q9BQ52 826 aaKnown RBP4.26□□□□□ -1.73
SCFD1-216ENST00000555550 TMEM120AQ9BXJ8 343 aa4.26□□□□□ -1.73
SCFD1-216ENST00000555550 KRTAP4-4Q9BYR3 166 aa4.26□□□□□ -1.73
SCFD1-216ENST00000555550 ERRFI1Q9UJM3 462 aaPredicted RBP4.26□□□□□ -1.73
SCFD1-216ENST00000555550 PCDHA7Q9UN72 937 aa4.26□□□□□ -1.73
SCFD1-216ENST00000555550 LMTK3Q96Q04 1460 aa4.25□□□□□ -1.73
SCFD1-216ENST00000555550 A0A0G2JK05 382 aa4.25□□□□□ -1.73
SCFD1-216ENST00000555550 AQP12BA6NM10 295 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms