RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 GEMIN4P57678 1058 aaKnown RBP12.01□□□□□ -0.49
SHMT2-212ENST00000554467 SESN2P58004 480 aaPredicted RBP12.01□□□□□ -0.49
SHMT2-212ENST00000554467 MXRA7P84157 204 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 CASC4Q6P4E1 433 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 CEP128Q6ZU80 1094 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 TRABD2AQ86V40 505 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 COLGALT1Q8NBJ5 622 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 SPOCK2Q92563 424 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 RTP4Q96DX8 246 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 UBE2OQ9C0C9 1292 aaKnown RBP12.01□□□□□ -0.49
SHMT2-212ENST00000554467 A0A1W2PQH9 124 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 CXorf49A8MYA2 514 aaPredicted RBP12□□□□□ -0.49
SHMT2-212ENST00000554467 ENPP3O14638 875 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 LRIG2O94898 1065 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 RPA3P35244 121 aaPredicted RBP12□□□□□ -0.49
SHMT2-212ENST00000554467 NR2C2P49116 596 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 USP46P62068 366 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 DSC1Q08554 894 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 TRMT10BQ6PF06 316 aaKnown RBP12□□□□□ -0.49
SHMT2-212ENST00000554467 ZNF534Q76KX8 674 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 CASP10Q92851 521 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 IFT43Q96FT9 208 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 TGS1Q96RS0 853 aaKnown RBP12□□□□□ -0.49
SHMT2-212ENST00000554467 PLAC1Q9HBJ0 212 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 OSER1Q9NX31 292 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 NKIRAS1Q9NYS0 192 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 ZC3H7BQ9UGR2 993 aaKnown RBP12□□□□□ -0.49
SHMT2-212ENST00000554467 DSEQ9UL01 958 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 CFAP69A5D8W1 941 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 KRT4P19013 534 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 ATP5DP30049 168 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 MGAT5Q09328 741 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 VARS2Q5ST30 1063 aaKnown RBP12□□□□□ -0.49
SHMT2-212ENST00000554467 CES3Q6UWW8 571 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 ARHGAP22Q7Z5H3 698 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 TMCO2Q7Z6W1 182 aaPredicted RBP12□□□□□ -0.49
SHMT2-212ENST00000554467 PPM1NQ8N819 430 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 SLAIN1Q8ND83 568 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 USP33Q8TEY7 942 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 UBP1Q9NZI7 540 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 PSMC3IPQ9P2W1 217 aaPredicted RBP12□□□□□ -0.49
SHMT2-212ENST00000554467 PCDHB8Q9UN66 801 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 TTLL3Q9Y4R7 772 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 SCN5AQ14524 2016 aa12□□□□□ -0.49
SHMT2-212ENST00000554467 WDR91A4D1P6 747 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 TTC36A6NLP5 189 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 DCLK1O15075 740 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 GCATO75600 419 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 TBX18O95935 607 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 EOMESO95936 686 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 PHBP35232 272 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 BTBD8Q5XKL5 378 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 OR52E8Q6IFG1 317 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 SCD5Q86SK9 330 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 ZNF567Q8N184 647 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 SLC43A3Q8NBI5 491 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 UROC1Q96N76 676 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 CCDC134Q9H6E4 229 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 ACSS3Q9H6R3 686 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 ALG13Q9NP73 1137 aaKnown RBP11.99□□□□□ -0.49
SHMT2-212ENST00000554467 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.99□□□□□ -0.49
SHMT2-212ENST00000554467 SP100P23497 879 aaPredicted RBP11.99□□□□□ -0.49
SHMT2-212ENST00000554467 WDR4P57081 412 aaKnown RBP11.99□□□□□ -0.49
SHMT2-212ENST00000554467 WASHC5Q12768 1159 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 CTXN3Q4LDR2 81 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 PM20D1Q6GTS8 502 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 RSPO2Q6UXX9 243 aaPredicted RBP11.99□□□□□ -0.49
SHMT2-212ENST00000554467 ARHGAP36Q6ZRI8 547 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 TAS1R1Q7RTX1 841 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 PID1Q7Z2X4 250 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 UCMAQ8WVF2 138 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 APOL2Q9BQE5 337 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 PCDHB7Q9Y5E2 793 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 A0A0A0MRY4 1105 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 CA4P22748 312 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 ALDH3A1P30838 453 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 FAM126BQ8IXS8 530 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 FAM81AQ8TBF8 368 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 DCAKDQ8WVC6 231 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 RMDN2Q96LZ7 410 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 SPATA13Q96N96 652 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 TSEN34Q9BSV6 310 aaKnown RBP11.99□□□□□ -0.49
SHMT2-212ENST00000554467 SMYD2Q9NRG4 433 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 GRID1Q9ULK0 1009 aa11.99□□□□□ -0.49
SHMT2-212ENST00000554467 WDR27A2RRH5 827 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 CXCR3P49682 368 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 FAM189BP81408 668 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 FAAP100Q0VG06 881 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 BMPR2Q13873 1038 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 ARL13BQ3SXY8 428 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 TMEM154Q6P9G4 183 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 PPP1R21Q6ZMI0 780 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 VSIG1Q86XK7 387 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 CRISPLD1Q9H336 500 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 NDFIP2Q9NV92 336 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 KLHL8Q9P2G9 620 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-212ENST00000554467 LRFN2Q9ULH4 789 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-212ENST00000554467 CCDC78A2IDD5 438 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 DFFAO00273 331 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms