RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 C16orf89Q6UX73 402 aa16.01■□□□□ 0.15
CUX1-211ENST00000546411 CLNKQ7Z7G1 428 aa16.01■□□□□ 0.15
CUX1-211ENST00000546411 SNX32Q86XE0 403 aa16.01■□□□□ 0.15
CUX1-211ENST00000546411 PCYT2Q99447 389 aa16.01■□□□□ 0.15
CUX1-211ENST00000546411 ING2Q9H160 280 aa16.01■□□□□ 0.15
CUX1-211ENST00000546411 MPP6Q9NZW5 540 aa16.01■□□□□ 0.15
CUX1-211ENST00000546411 SMPD1P17405 629 aa16.01■□□□□ 0.15
CUX1-211ENST00000546411 FUT11Q495W5 492 aa16.01■□□□□ 0.15
CUX1-211ENST00000546411 UNC5BQ8IZJ1 945 aa16.01■□□□□ 0.15
CUX1-211ENST00000546411 NDNQ99608 321 aa16.01■□□□□ 0.15
CUX1-211ENST00000546411 STX7O15400 261 aaKnown RBP16■□□□□ 0.15
CUX1-211ENST00000546411 THRAP10827 490 aa16■□□□□ 0.15
CUX1-211ENST00000546411 MRPS35P82673 323 aaKnown RBP16■□□□□ 0.15
CUX1-211ENST00000546411 LBRQ14739 615 aaKnown RBP16■□□□□ 0.15
CUX1-211ENST00000546411 MAPRE2Q15555 327 aa16■□□□□ 0.15
CUX1-211ENST00000546411 LRRC52Q8N7C0 313 aa16■□□□□ 0.15
CUX1-211ENST00000546411 ATP6V0D2Q8N8Y2 350 aa16■□□□□ 0.15
CUX1-211ENST00000546411 MSI1O43347 362 aaKnown RBP16■□□□□ 0.15
CUX1-211ENST00000546411 CD151P48509 253 aa16■□□□□ 0.15
CUX1-211ENST00000546411 CYLC2Q14093 348 aaPredicted RBP16■□□□□ 0.15
CUX1-211ENST00000546411 RNF180Q86T96 592 aa16■□□□□ 0.15
CUX1-211ENST00000546411 TTC7BQ86TV6 843 aa16■□□□□ 0.15
CUX1-211ENST00000546411 GIPC2Q8TF65 315 aa16■□□□□ 0.15
CUX1-211ENST00000546411 SERAC1Q96JX3 654 aa16■□□□□ 0.15
CUX1-211ENST00000546411 CNBD2Q96M20 576 aa16■□□□□ 0.15
CUX1-211ENST00000546411 SDCBP2Q9H190 292 aa16■□□□□ 0.15
CUX1-211ENST00000546411 RNF39Q9H2S5 420 aa16■□□□□ 0.15
CUX1-211ENST00000546411 PNPOQ9NVS9 261 aa16■□□□□ 0.15
CUX1-211ENST00000546411 PRR5-ARHGAP8B1AHC4 643 aa16■□□□□ 0.15
CUX1-211ENST00000546411 FZD9O00144 591 aa16■□□□□ 0.15
CUX1-211ENST00000546411 GRIN3BO60391 1043 aa16■□□□□ 0.15
CUX1-211ENST00000546411 OR4Q2P0C623 313 aa16■□□□□ 0.15
CUX1-211ENST00000546411 HMOX2P30519 316 aa16■□□□□ 0.15
CUX1-211ENST00000546411 OR1E1P30953 314 aa16■□□□□ 0.15
CUX1-211ENST00000546411 ARHGAP8P85298 464 aa16■□□□□ 0.15
CUX1-211ENST00000546411 IYDQ6PHW0 289 aa16■□□□□ 0.15
CUX1-211ENST00000546411 TMC7Q7Z402 723 aa16■□□□□ 0.15
CUX1-211ENST00000546411 C10orf107Q8IVU9 208 aa16■□□□□ 0.15
CUX1-211ENST00000546411 SLC35B2Q8TB61 432 aa16■□□□□ 0.15
CUX1-211ENST00000546411 PIWIL1Q96J94 861 aaKnown RBP16■□□□□ 0.15
CUX1-211ENST00000546411 CLPTM1LQ96KA5 538 aa16■□□□□ 0.15
CUX1-211ENST00000546411 ZNF317Q96PQ6 595 aaPredicted RBP16■□□□□ 0.15
CUX1-211ENST00000546411 MTG1Q9BT17 334 aaPredicted RBP16■□□□□ 0.15
CUX1-211ENST00000546411 CDHR5Q9HBB8 845 aa16■□□□□ 0.15
CUX1-211ENST00000546411 CCDC167Q9P0B6 97 aa16■□□□□ 0.15
CUX1-211ENST00000546411 PFDN1O60925 122 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 DDHD2O94830 711 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 METTL18O95568 372 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 MPP2Q14168 576 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 GRTP1Q5TC63 336 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 RNF219Q5W0B1 726 aaPredicted RBP15.99■□□□□ 0.15
CUX1-211ENST00000546411 PTRHD1Q6GMV3 140 aaKnown RBP15.99■□□□□ 0.15
CUX1-211ENST00000546411 AZIN2Q96A70 460 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 KCTD15Q96SI1 283 aaPredicted RBP15.99■□□□□ 0.15
CUX1-211ENST00000546411 CPNE1Q99829 537 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 CCDC90BQ9GZT6 254 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 EFCAB1Q9HAE3 211 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 TMPRSS4Q9NRS4 437 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 WARS2Q9UGM6 360 aaKnown RBP15.99■□□□□ 0.15
CUX1-211ENST00000546411 DNAJB2P25686 324 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 PTDSS1P48651 473 aaKnown RBP15.99■□□□□ 0.15
CUX1-211ENST00000546411 TBX4P57082 545 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 DSG1Q02413 1049 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 PIGWQ7Z7B1 504 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 TTC30AQ86WT1 665 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 MYLPFQ96A32 169 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 CINPQ9BW66 212 aaPredicted RBP15.99■□□□□ 0.15
CUX1-211ENST00000546411 UBE2OQ9C0C9 1292 aaKnown RBP15.99■□□□□ 0.15
CUX1-211ENST00000546411 SAR1AQ9NR31 198 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 SIX4Q9UIU6 781 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 EFR3BQ9Y2G0 817 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 TIAM2Q8IVF5 1701 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 HACD1B0YJ81 288 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 XPO1O14980 1071 aaKnown RBP15.99■□□□□ 0.15
CUX1-211ENST00000546411 SRP72O76094 671 aaKnown RBP15.99■□□□□ 0.15
CUX1-211ENST00000546411 APOA4P06727 396 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 AXLP30530 894 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 ADRA1BP35368 520 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 FCGRTP55899 365 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 BNIP1Q12981 228 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 MRNIPQ6NTE8 343 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 PACS1Q6VY07 963 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 KYAT3Q6YP21 454 aaKnown RBP15.99■□□□□ 0.15
CUX1-211ENST00000546411 SLC41A1Q8IVJ1 513 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 FAM13CQ8NE31 585 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 MFSD3Q96ES6 412 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 DUSP16Q9BY84 665 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 CHKBQ9Y259 395 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 DTNAQ9Y4J8 743 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 PCDHA11Q9Y5I1 949 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 SNX13Q9Y5W8 968 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 EPHA3P29320 983 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 POU5F1Q01860 360 aaKnown RBP15.99■□□□□ 0.15
CUX1-211ENST00000546411 CRYMQ14894 314 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 BNC2Q6ZN30 1099 aaPredicted RBP15.99■□□□□ 0.15
CUX1-211ENST00000546411 LRRC74BQ6ZQY2 392 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 CTU1Q7Z7A3 348 aaKnown RBP15.99■□□□□ 0.15
CUX1-211ENST00000546411 FAM35AQ86V20 835 aa15.99■□□□□ 0.15
CUX1-211ENST00000546411 ZSCAN18Q8TBC5 510 aaPredicted RBP15.99■□□□□ 0.15
CUX1-211ENST00000546411 KCTD4Q8WVF5 259 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms