RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 SLC34A2O95436 690 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 TDP2O95551 362 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 NR3C1P04150 777 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 RSPH10BP0C881 870 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 GSTT2P0CG29 244 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 GSTT2BP0CG30 244 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 SPATA31C1P0DKV0 1188 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 TXNP10599 105 aaKnown RBP5.4□□□□□ -1.55
USP28-213ENST00000544967 ACTN1P12814 892 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 FMO5P49326 533 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 SLC12A3P55017 1021 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 ROR1Q01973 937 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 CCNIQ14094 377 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 TLR1Q15399 786 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 SEPT7Q16181 437 aaKnown RBP5.4□□□□□ -1.55
USP28-213ENST00000544967 IZUMO3Q5VZ72 239 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 CHAC2Q8WUX2 184 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 DCUN1D1Q96GG9 259 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 RANBP9Q96S59 729 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 TUBA1CQ9BQE3 449 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 GBA3Q9H227 469 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 HIPK3Q9H422 1215 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 MOV10Q9HCE1 1003 aaKnown RBP5.4□□□□□ -1.55
USP28-213ENST00000544967 MLXIPLQ9NP71 852 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 PNPLA8Q9NP80 782 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 FANCFQ9NPI8 374 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 DMAC2Q9NW81 257 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 ZIM2Q9NZV7 527 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 SEPT3Q9UH03 358 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 PCDHGB3Q9Y5G1 929 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 BRCA2P51587 3418 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 WDR64B1ANS9 1081 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 CENPBD1B2RD01 187 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 FAM47E-STBD1D6RA91 191 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 H3BRB1 525 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 TOR1BO14657 336 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 GAS2O43903 313 aaKnown RBP5.39□□□□□ -1.55
USP28-213ENST00000544967 IL33O95760 270 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 FGFR1P11362 822 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 CDH3P22223 829 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 ADSLP30566 484 aaPredicted RBP5.39□□□□□ -1.55
USP28-213ENST00000544967 L1CAMP32004 1257 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 ALDH1A3P47895 512 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 ST13P50502 369 aaKnown RBP5.39□□□□□ -1.55
USP28-213ENST00000544967 ACTR2P61160 394 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 MYBPC1Q00872 1141 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 FAAP100Q0VG06 881 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 ADGRE1Q14246 886 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 MFSD10Q14728 455 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 LY6KQ17RY6 165 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 LETM2Q2VYF4 491 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 HSDL1Q3SXM5 330 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 ARL13BQ3SXY8 428 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 ARMC4Q5T2S8 1044 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 SH2D5Q6ZV89 423 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 KATNAL2Q8IYT4 538 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 NKAIN3Q8N8D7 197 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 PCYOX1LQ8NBM8 494 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 OR6J1Q8NGC5 347 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 TOP1MTQ969P6 601 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 TIFAQ96CG3 184 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 DUS3LQ96G46 650 aaKnown RBP5.39□□□□□ -1.55
USP28-213ENST00000544967 FAM167AQ96KS9 214 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 CCDC138Q96M89 665 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 MRPL1Q9BYD6 325 aaKnown RBP5.39□□□□□ -1.55
USP28-213ENST00000544967 FRMD8Q9BZ67 464 aaPredicted RBP5.39□□□□□ -1.55
USP28-213ENST00000544967 TUT1Q9H6E5 874 aaKnown RBP5.39□□□□□ -1.55
USP28-213ENST00000544967 KCND2Q9NZV8 630 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 SIRPGQ9P1W8 387 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 ADAMTS6Q9UKP5 1117 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 MKL2Q9ULH7 1088 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 NRCAMQ92823 1304 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 SDR42E2A6NKP2 422 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 H3BRJ5 948 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 I3L4J1 428 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 INPPL1O15357 1258 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 SNNO75324 88 aaPredicted RBP5.39□□□□□ -1.55
USP28-213ENST00000544967 PLA2G4BP0C869 781 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 OCM2P0CE71 109 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 OCMP0CE72 109 aaPredicted RBP5.39□□□□□ -1.55
USP28-213ENST00000544967 MYL2P10916 166 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 PMLP29590 882 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 ADCY8P40145 1251 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 GRSF1Q12849 480 aaKnown RBP eCLIP5.39□□□□□ -1.55
USP28-213ENST00000544967 TRPC3Q13507 836 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 PCBP1Q15365 356 aaKnown RBP eCLIP5.39□□□□□ -1.55
USP28-213ENST00000544967 KCNA10Q16322 511 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 ZBED5Q49AG3 693 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 ZNF484Q5JVG2 852 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 PRAMEF19Q5SWL8 479 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 SLX4IPQ5VYV7 408 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 ELMSAN1Q6PJG2 1045 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 RNF111Q6ZNA4 994 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 STXBP4Q6ZWJ1 553 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 DYMQ7RTS9 669 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 CHERPQ8IWX8 916 aaKnown RBP5.39□□□□□ -1.55
USP28-213ENST00000544967 C12orf56Q8IXR9 622 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 PEX5LQ8IYB4 626 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 TNS4Q8IZW8 715 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 CEP70Q8NHQ1 597 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms