RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 USP25Q9UHP3 1055 aa7.58□□□□□ -1.2
YBX3-209ENST00000540747 TPX2Q9ULW0 747 aaKnown RBP7.58□□□□□ -1.2
YBX3-209ENST00000540747 ERVW-1Q9UQF0 538 aa7.58□□□□□ -1.2
YBX3-209ENST00000540747 BOD1L1Q8NFC6 3051 aa7.58□□□□□ -1.2
YBX3-209ENST00000540747 MYLKQ15746 1914 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 EDDM13A0A1B0GTR0 161 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 TEX51A0A1B0GUA7 166 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 LRRC72A6NJI9 287 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 TTC34A8MYJ7 566 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 TLR4O00206 839 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 LZTS3O60299 673 aaPredicted RBP7.57□□□□□ -1.2
YBX3-209ENST00000540747 BRINP1O60477 761 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 ITGAVP06756 1048 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 SRPRAP08240 638 aaKnown RBP7.57□□□□□ -1.2
YBX3-209ENST00000540747 KRT13P13646 458 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 GOT1P17174 413 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 CKMT2P17540 419 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 ACP1P24666 158 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 SLC8A1P32418 973 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 RPL34P49207 117 aaKnown RBP7.57□□□□□ -1.2
YBX3-209ENST00000540747 ARRB1P49407 418 aaPredicted RBP7.57□□□□□ -1.2
YBX3-209ENST00000540747 VASPP50552 380 aaPredicted RBP7.57□□□□□ -1.2
YBX3-209ENST00000540747 METAP1P53582 386 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 SLC8A3P57103 927 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 RPS24P62847 133 aaKnown RBP7.57□□□□□ -1.2
YBX3-209ENST00000540747 INSM1Q01101 510 aaPredicted RBP7.57□□□□□ -1.2
YBX3-209ENST00000540747 SEMG2Q02383 582 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 BNIP3Q12983 259 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 NNTQ13423 1086 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 ADAM9Q13443 819 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 CUL2Q13617 745 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 PKP1Q13835 747 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 TBC1D25Q3MII6 688 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 SGO2Q562F6 1265 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 MS4A13Q5J8X5 152 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 PITRM1Q5JRX3 1037 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 CDCP2Q5VXM1 449 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 NAPEPLDQ6IQ20 393 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 PMF1Q6P1K2 205 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 LCLAT1Q6UWP7 414 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 MMS22LQ6ZRQ5 1243 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 IQCHQ86VS3 1027 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 MMAAQ8IVH4 418 aaKnown RBP7.57□□□□□ -1.2
YBX3-209ENST00000540747 MFN1Q8IWA4 741 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 UNC45BQ8IWX7 931 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 DHX40Q8IX18 779 aaKnown RBP7.57□□□□□ -1.2
YBX3-209ENST00000540747 SPACA3Q8IXA5 215 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 EID2Q8N6I1 236 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 MFSD2AQ8NA29 543 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 CCDC150Q8NCX0 1101 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 UBA3Q8TBC4 463 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 RNF139Q8WU17 664 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 FRS2Q8WU20 508 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 FGF11Q92914 225 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 PTPRN2Q92932 1015 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 HIC2Q96JB3 615 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 NUCKS1Q9H1E3 243 aaKnown RBP7.57□□□□□ -1.2
YBX3-209ENST00000540747 MMRN2Q9H8L6 949 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 LRRC4Q9HBW1 653 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 SLCO3A1Q9UIG8 710 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 NCKAP1Q9Y2A7 1128 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 SSUH2Q9Y2M2 353 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 NYNRINQ9P2P1 1898 aaKnown RBP7.57□□□□□ -1.2
YBX3-209ENST00000540747 FLNCQ14315 2725 aa7.57□□□□□ -1.2
YBX3-209ENST00000540747 A0A1B0GVL5 298 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 FAM47DPA6NHR8 397 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 CYSRT1A8MQ03 144 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 TRIM38O00635 465 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 RNASEH1O60930 286 aaKnown RBP7.56□□□□□ -1.2
YBX3-209ENST00000540747 RNASEH2AO75792 299 aaKnown RBP7.56□□□□□ -1.2
YBX3-209ENST00000540747 DXOO77932 396 aaKnown RBP7.56□□□□□ -1.2
YBX3-209ENST00000540747 LUC7L3O95232 432 aaKnown RBP7.56□□□□□ -1.2
YBX3-209ENST00000540747 ADH1BP00325 375 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 IGLV3-25P01717 112 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 LTFP02788 710 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 PAEPP09466 180 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 GIMD1P0DJR0 217 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 VDRP11473 427 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 ABCB4P21439 1286 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 C5AR1P21730 350 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 RPL13P26373 211 aaKnown RBP7.56□□□□□ -1.2
YBX3-209ENST00000540747 MZF1P28698 734 aaPredicted RBP7.56□□□□□ -1.2
YBX3-209ENST00000540747 SLC11A2P49281 568 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 TBX4P57082 545 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 DNM1Q05193 864 aaKnown RBP7.56□□□□□ -1.2
YBX3-209ENST00000540747 SFSWAPQ12872 951 aaKnown RBP7.56□□□□□ -1.2
YBX3-209ENST00000540747 OVGP1Q12889 678 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 EIF4EBP2Q13542 120 aaPredicted RBP7.56□□□□□ -1.2
YBX3-209ENST00000540747 ELAVL3Q14576 367 aaKnown RBP7.56□□□□□ -1.2
YBX3-209ENST00000540747 DCAF6Q58WW2 860 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 FOXD4L5Q5VV16 416 aaPredicted RBP7.56□□□□□ -1.2
YBX3-209ENST00000540747 SND1Q7KZF4 910 aaKnown RBP eCLIP7.56□□□□□ -1.2
YBX3-209ENST00000540747 BEND5Q7L4P6 421 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 GPR155Q7Z3F1 870 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 TRIM69Q86WT6 500 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 HSCBQ8IWL3 235 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 SIX6OS1Q8N1H7 587 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 STK40Q8N2I9 435 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 OXR1Q8N573 874 aa7.56□□□□□ -1.2
YBX3-209ENST00000540747 TMEM145Q8NBT3 493 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms