RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 LMNB2Q03252 620 aa12.34□□□□□ -0.43
CLIP1-208ENST00000537004 TAF5Q15542 800 aa12.34□□□□□ -0.43
CLIP1-208ENST00000537004 SH3PXD2AQ5TCZ1 1133 aa12.34□□□□□ -0.43
CLIP1-208ENST00000537004 DRICH1Q6PGQ1 229 aaPredicted RBP12.34□□□□□ -0.43
CLIP1-208ENST00000537004 GSTA5Q7RTV2 222 aa12.34□□□□□ -0.43
CLIP1-208ENST00000537004 CSGALNACT1Q8TDX6 532 aa12.34□□□□□ -0.43
CLIP1-208ENST00000537004 HNRNPABQ99729 332 aaKnown RBP12.34□□□□□ -0.43
CLIP1-208ENST00000537004 FAM83CQ9BQN1 747 aa12.34□□□□□ -0.43
CLIP1-208ENST00000537004 TSPYL1Q9H0U9 437 aa12.34□□□□□ -0.43
CLIP1-208ENST00000537004 PABPC3Q9H361 631 aaKnown RBP12.34□□□□□ -0.43
CLIP1-208ENST00000537004 CSNK1G1Q9HCP0 422 aa12.34□□□□□ -0.43
CLIP1-208ENST00000537004 TRPV5Q9NQA5 729 aa12.34□□□□□ -0.43
CLIP1-208ENST00000537004 OBP2AQ9NY56 170 aa12.34□□□□□ -0.43
CLIP1-208ENST00000537004 GMIPQ9P107 970 aa12.34□□□□□ -0.43
CLIP1-208ENST00000537004 RIF1Q5UIP0 2472 aaKnown RBP12.34□□□□□ -0.43
CLIP1-208ENST00000537004 VPS41P49754 854 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 KPNA1P52294 538 aaPredicted RBP12.33□□□□□ -0.43
CLIP1-208ENST00000537004 PTPN5P54829 565 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 ANGPT1Q15389 498 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 TAZQ16635 292 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 C15orf59Q2T9L4 293 aaPredicted RBP12.33□□□□□ -0.43
CLIP1-208ENST00000537004 RAB6CQ53S08 254 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 KCTD16Q68DU8 428 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 NAIF1Q69YI7 327 aaPredicted RBP12.33□□□□□ -0.43
CLIP1-208ENST00000537004 ZDHHC17Q8IUH5 632 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 ZNF687Q8N1G0 1237 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 CCDC89Q8N998 374 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 KCTD6Q8NC69 237 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 SH3RF2Q8TEC5 729 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 FAM3CQ92520 227 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 HSPH1Q92598 858 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 HAUS1Q96CS2 278 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 ATP6V1G3Q96LB4 118 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 CEP295NLQ96MC4 621 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 CFAP57Q96MR6 1250 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 PEBP4Q96S96 227 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 RAB6CQ9H0N0 254 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 KCNH6Q9H252 994 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 LINC00597Q9H2U6 94 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 EPB41L4BQ9H329 900 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 TMBIM4Q9HC24 238 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 HPS4Q9NQG7 708 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 ZNF148Q9UQR1 794 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 WNT6Q9Y6F9 365 aa12.33□□□□□ -0.43
CLIP1-208ENST00000537004 HHLA1C9JL84 531 aa12.33□□□□□ -0.44
CLIP1-208ENST00000537004 CD48P09326 243 aa12.33□□□□□ -0.44
CLIP1-208ENST00000537004 USP17L7P0C7H9 530 aa12.33□□□□□ -0.44
CLIP1-208ENST00000537004 MYZAPP0CAP1 466 aa12.33□□□□□ -0.44
CLIP1-208ENST00000537004 ITGA8P53708 1063 aa12.33□□□□□ -0.44
CLIP1-208ENST00000537004 SLMAPQ14BN4 828 aa12.33□□□□□ -0.44
CLIP1-208ENST00000537004 ZNF77Q15935 545 aa12.33□□□□□ -0.44
CLIP1-208ENST00000537004 CDO1Q16878 200 aa12.33□□□□□ -0.44
CLIP1-208ENST00000537004 CCDC14Q49A88 953 aa12.33□□□□□ -0.44
CLIP1-208ENST00000537004 RHBDF2Q6PJF5 856 aa12.33□□□□□ -0.44
CLIP1-208ENST00000537004 CHFRQ96EP1 664 aa12.33□□□□□ -0.44
CLIP1-208ENST00000537004 CCSER2Q9H7U1 834 aa12.33□□□□□ -0.44
CLIP1-208ENST00000537004 CYLDQ9NQC7 956 aa12.33□□□□□ -0.44
CLIP1-208ENST00000537004 THG1LQ9NWX6 298 aaKnown RBP12.33□□□□□ -0.44
CLIP1-208ENST00000537004 ZMYM5Q9UJ78 669 aa12.33□□□□□ -0.44
CLIP1-208ENST00000537004 SPECC1L-ADORA2AF8WAN1 911 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 CST8O60676 142 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 RTN3O95197 1032 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-208ENST00000537004 TBX18O95935 607 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 OAS1P00973 400 aaKnown RBP12.32□□□□□ -0.44
CLIP1-208ENST00000537004 RARGP13631 454 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 SDC4P31431 198 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 CTHP32929 405 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 RPL34P49207 117 aaKnown RBP12.32□□□□□ -0.44
CLIP1-208ENST00000537004 EIF3BP55884 814 aaKnown RBP12.32□□□□□ -0.44
CLIP1-208ENST00000537004 DYNLT1P63172 113 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 ATP11AP98196 1134 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 CAV1Q03135 178 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 OASLQ15646 514 aaKnown RBP12.32□□□□□ -0.44
CLIP1-208ENST00000537004 DENND2CQ68D51 928 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 BBS12Q6ZW61 710 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 CYP4V2Q6ZWL3 525 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-208ENST00000537004 CCDC25Q86WR0 208 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 SH2D3CQ8N5H7 860 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 ATOH1Q92858 354 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-208ENST00000537004 NKD2Q969F2 451 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-208ENST00000537004 CENPHQ9H3R5 247 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 SEMA4AQ9H3S1 761 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 IL37Q9NZH6 218 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 ANAPC5Q9UJX4 755 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 DRG1Q9Y295 367 aaKnown RBP12.32□□□□□ -0.44
CLIP1-208ENST00000537004 CPQQ9Y646 472 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 GREB1Q4ZG55 1949 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 DMXL1Q9Y485 3027 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 GPR179Q6PRD1 2367 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 HMGB1P1B2RPK0 211 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-208ENST00000537004 COCHO43405 550 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 PRPSAP2O60256 369 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 ITGAVP06756 1048 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 NUDT17P0C025 328 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 LCP1P13796 627 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 IFFO1Q0D2I5 559 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 PRUNE1Q86TP1 453 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 ALLCQ8N6M5 410 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 BBOF1Q8ND07 529 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 SLC35B2Q8TB61 432 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms