RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 CNTN5O94779 1100 aa13.38□□□□□ -0.27
VPS28-216ENST00000533806 GABRG2P18507 467 aa13.38□□□□□ -0.27
VPS28-216ENST00000533806 ZNF252P-AS1Q0IIN9 211 aa13.38□□□□□ -0.27
VPS28-216ENST00000533806 SCAPQ12770 1279 aa13.38□□□□□ -0.27
VPS28-216ENST00000533806 SLC12A1Q13621 1099 aa13.38□□□□□ -0.27
VPS28-216ENST00000533806 CDH18Q13634 790 aa13.38□□□□□ -0.27
VPS28-216ENST00000533806 E2F5Q15329 346 aa13.38□□□□□ -0.27
VPS28-216ENST00000533806 ALFQ53S48 1182 aa13.38□□□□□ -0.27
VPS28-216ENST00000533806 PITRM1Q5JRX3 1037 aa13.38□□□□□ -0.27
VPS28-216ENST00000533806 SDE2Q6IQ49 451 aa13.38□□□□□ -0.27
VPS28-216ENST00000533806 ANO7Q6IWH7 933 aa13.38□□□□□ -0.27
VPS28-216ENST00000533806 APCDD1Q8J025 514 aa13.38□□□□□ -0.27
VPS28-216ENST00000533806 ARFGAP1Q8N6T3 406 aa13.38□□□□□ -0.27
VPS28-216ENST00000533806 KDM1BQ8NB78 822 aa13.38□□□□□ -0.27
VPS28-216ENST00000533806 NTAN1Q96AB6 310 aa13.38□□□□□ -0.27
VPS28-216ENST00000533806 ZC3H10Q96K80 434 aaKnown RBP13.38□□□□□ -0.27
VPS28-216ENST00000533806 MAGEB5Q9BZ81 275 aa13.38□□□□□ -0.27
VPS28-216ENST00000533806 TRIM7Q9C029 511 aa13.38□□□□□ -0.27
VPS28-216ENST00000533806 OSBPL2Q9H1P3 480 aa13.38□□□□□ -0.27
VPS28-216ENST00000533806 KIAA1522Q9P206 1035 aaPredicted RBP13.38□□□□□ -0.27
VPS28-216ENST00000533806 PPARGC1AQ9UBK2 798 aaKnown RBP13.38□□□□□ -0.27
VPS28-216ENST00000533806 NEU3Q9UQ49 428 aa13.38□□□□□ -0.27
VPS28-216ENST00000533806 CFAP54Q96N23 3096 aa13.38□□□□□ -0.27
VPS28-216ENST00000533806 TCRBV21S2A2A0A5A6 115 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 E9PAM4 449 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 FAM72CH0Y354 149 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 H0Y626 953 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 ATMINO43313 823 aaPredicted RBP13.37□□□□□ -0.27
VPS28-216ENST00000533806 GFRA3O60609 400 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 MFAP3LO75121 409 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 RPP40O75818 363 aaKnown RBP13.37□□□□□ -0.27
VPS28-216ENST00000533806 ATP5BP06576 529 aaKnown RBP13.37□□□□□ -0.27
VPS28-216ENST00000533806 MYBL1P10243 752 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 POLR2EP19388 210 aaKnown RBP13.37□□□□□ -0.27
VPS28-216ENST00000533806 PRKCHP24723 683 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 MZF1P28698 734 aaPredicted RBP13.37□□□□□ -0.27
VPS28-216ENST00000533806 P2RY2P41231 377 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 CSKP41240 450 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 CDH4P55283 916 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 MAPK8IP2Q13387 824 aaPredicted RBP13.37□□□□□ -0.27
VPS28-216ENST00000533806 CAMK2GQ13555 558 aaPredicted RBP13.37□□□□□ -0.27
VPS28-216ENST00000533806 CDO1Q16878 200 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 PLEKHG6Q3KR16 790 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 TDRD12Q587J7 1177 aaKnown RBP13.37□□□□□ -0.27
VPS28-216ENST00000533806 FAM72AQ5TYM5 149 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 FAM72DQ6L9T8 149 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 FAM72BQ86X60 149 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 CCDC185Q8N715 623 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 FNIP1Q8TF40 1166 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 CYB5D2Q8WUJ1 264 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 FEM1AQ9BSK4 669 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 TPSD1Q9BZJ3 242 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 CNOT8Q9UFF9 292 aaKnown RBP13.37□□□□□ -0.27
VPS28-216ENST00000533806 OR12D3Q9UGF7 316 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 PLA2G4CQ9UP65 541 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 SMG5Q9UPR3 1016 aaKnown RBP13.37□□□□□ -0.27
VPS28-216ENST00000533806 RAD54BQ9Y620 910 aa13.37□□□□□ -0.27
VPS28-216ENST00000533806 MYO18AQ92614 2054 aaKnown RBP13.36□□□□□ -0.27
VPS28-216ENST00000533806 MUC22E2RYF6 1773 aaPredicted RBP13.36□□□□□ -0.27
VPS28-216ENST00000533806 ALDH1A2O94788 518 aa13.36□□□□□ -0.27
VPS28-216ENST00000533806 ASLP04424 464 aa13.36□□□□□ -0.27
VPS28-216ENST00000533806 NDUFV2P19404 249 aa13.36□□□□□ -0.27
VPS28-216ENST00000533806 EIF4A3P38919 411 aaKnown RBP13.36□□□□□ -0.27
VPS28-216ENST00000533806 CTSOP43234 321 aaPredicted RBP13.36□□□□□ -0.27
VPS28-216ENST00000533806 VASPP50552 380 aaPredicted RBP13.36□□□□□ -0.27
VPS28-216ENST00000533806 COPAP53621 1224 aa13.36□□□□□ -0.27
VPS28-216ENST00000533806 OXCT1P55809 520 aa13.36□□□□□ -0.27
VPS28-216ENST00000533806 SIM2Q14190 667 aaPredicted RBP13.36□□□□□ -0.27
VPS28-216ENST00000533806 MAP7D1Q3KQU3 841 aa13.36□□□□□ -0.27
VPS28-216ENST00000533806 ARL13BQ3SXY8 428 aa13.36□□□□□ -0.27
VPS28-216ENST00000533806 ALKBH5Q6P6C2 394 aaKnown RBP13.36□□□□□ -0.27
VPS28-216ENST00000533806 DCUN1D2Q6PH85 259 aa13.36□□□□□ -0.27
VPS28-216ENST00000533806 TMC6Q7Z403 805 aa13.36□□□□□ -0.27
VPS28-216ENST00000533806 METTL3Q86U44 580 aaKnown RBP13.36□□□□□ -0.27
VPS28-216ENST00000533806 HMGB4Q8WW32 186 aa13.36□□□□□ -0.27
VPS28-216ENST00000533806 TRIM11Q96F44 468 aa13.36□□□□□ -0.27
VPS28-216ENST00000533806 MRGPRX1Q96LB2 322 aa13.36□□□□□ -0.27
VPS28-216ENST00000533806 MKRN2Q9H000 416 aaKnown RBP13.36□□□□□ -0.27
VPS28-216ENST00000533806 THAP2Q9H0W7 228 aa13.36□□□□□ -0.27
VPS28-216ENST00000533806 DUSP15Q9H1R2 295 aaPredicted RBP13.36□□□□□ -0.27
VPS28-216ENST00000533806 RETREG1Q9H6L5 497 aa13.36□□□□□ -0.27
VPS28-216ENST00000533806 ABHD10Q9NUJ1 306 aa13.36□□□□□ -0.27
VPS28-216ENST00000533806 FAM186AA6NE01 2351 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.35□□□□□ -0.27
VPS28-216ENST00000533806 SSU72P8A0A1W2PR75 194 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 ANKRD62A6NC57 917 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 DCLK1O15075 740 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 CYP1A2P05177 515 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 HLA-EP13747 358 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 TGM1P22735 817 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 ADKP55263 362 aaKnown RBP13.35□□□□□ -0.27
VPS28-216ENST00000533806 ECT2LQ008S8 904 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 SEMA3BQ13214 749 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 ZNF177Q13360 481 aaPredicted RBP13.35□□□□□ -0.27
VPS28-216ENST00000533806 SLC18A3Q16572 532 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 PLK5Q496M5 336 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 USP39Q53GS9 565 aaKnown RBP13.35□□□□□ -0.27
VPS28-216ENST00000533806 LAIR1Q6GTX8 287 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 SERPINA13PQ6UXR4 307 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 LRRC31Q6UY01 552 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms