RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 ASLP04424 464 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 FAM228BP0C875 321 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 DESP17661 470 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 POLR2EP19388 210 aaKnown RBP15.5■□□□□ 0.07
CPSF1-208ENST00000532560 ADRA1BP35368 520 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 WASP42768 502 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 IRAK1P51617 712 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 CDH4P55283 916 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 OGDHQ02218 1023 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 SCAPQ12770 1279 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 SLC12A1Q13621 1099 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 PITRM1Q5JRX3 1037 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 ARTNQ5T4W7 220 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 CXorf57Q6NSI4 855 aaKnown RBP15.5■□□□□ 0.07
CPSF1-208ENST00000532560 LRRC31Q6UY01 552 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 ASCL5Q7RTU5 278 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 DNAAF5Q86Y56 855 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 CNGA4Q8IV77 575 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 SUMF1Q8NBK3 374 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 FNIP1Q8TF40 1166 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 GAB3Q8WWW8 586 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 TTC17Q96AE7 1141 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 ABHD10Q9NUJ1 306 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 INTS6Q9UL03 887 aaKnown RBP15.5■□□□□ 0.07
CPSF1-208ENST00000532560 NENFQ9UMX5 172 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 SMG5Q9UPR3 1016 aaKnown RBP15.5■□□□□ 0.07
CPSF1-208ENST00000532560 SNX10Q9Y5X0 201 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 CKAP5Q14008 2032 aa15.5■□□□□ 0.07
CPSF1-208ENST00000532560 VPS13AQ96RL7 3174 aa15.49■□□□□ 0.07
CPSF1-208ENST00000532560 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.49■□□□□ 0.07
CPSF1-208ENST00000532560 SSU72P8A0A1W2PR75 194 aa15.49■□□□□ 0.07
CPSF1-208ENST00000532560 E9PAM4 449 aa15.49■□□□□ 0.07
CPSF1-208ENST00000532560 RPP40O75818 363 aaKnown RBP15.49■□□□□ 0.07
CPSF1-208ENST00000532560 PRKCHP24723 683 aa15.49■□□□□ 0.07
CPSF1-208ENST00000532560 CSKP41240 450 aa15.49■□□□□ 0.07
CPSF1-208ENST00000532560 TBX2Q13207 712 aaPredicted RBP15.49■□□□□ 0.07
CPSF1-208ENST00000532560 ZNF177Q13360 481 aaPredicted RBP15.49■□□□□ 0.07
CPSF1-208ENST00000532560 MAPK8IP2Q13387 824 aaPredicted RBP15.49■□□□□ 0.07
CPSF1-208ENST00000532560 STARD3Q14849 445 aa15.49■□□□□ 0.07
CPSF1-208ENST00000532560 PTPRNQ16849 979 aa15.49■□□□□ 0.07
CPSF1-208ENST00000532560 PLEKHG6Q3KR16 790 aa15.49■□□□□ 0.07
CPSF1-208ENST00000532560 MANEALQ5VSG8 457 aa15.49■□□□□ 0.07
CPSF1-208ENST00000532560 KIAA1211LQ6NV74 962 aa15.49■□□□□ 0.07
CPSF1-208ENST00000532560 SERPINA13PQ6UXR4 307 aa15.49■□□□□ 0.07
CPSF1-208ENST00000532560 TMC6Q7Z403 805 aa15.49■□□□□ 0.07
CPSF1-208ENST00000532560 CCDC185Q8N715 623 aa15.49■□□□□ 0.07
CPSF1-208ENST00000532560 CYB5D2Q8WUJ1 264 aa15.49■□□□□ 0.07
CPSF1-208ENST00000532560 HMGB4Q8WW32 186 aa15.49■□□□□ 0.07
CPSF1-208ENST00000532560 OSBPL2Q9H1P3 480 aa15.49■□□□□ 0.07
CPSF1-208ENST00000532560 TMEM245Q9H330 911 aa15.49■□□□□ 0.07
CPSF1-208ENST00000532560 MRPL47Q9HD33 250 aaKnown RBP15.49■□□□□ 0.07
CPSF1-208ENST00000532560 ZNHIT6Q9NWK9 470 aaKnown RBP15.49■□□□□ 0.07
CPSF1-208ENST00000532560 BCCIPQ9P287 314 aaKnown RBP eCLIP15.49■□□□□ 0.07
CPSF1-208ENST00000532560 PPARGC1AQ9UBK2 798 aaKnown RBP15.49■□□□□ 0.07
CPSF1-208ENST00000532560 PLA2G4CQ9UP65 541 aa15.49■□□□□ 0.07
CPSF1-208ENST00000532560 TBC1D30Q9Y2I9 924 aa15.49■□□□□ 0.07
CPSF1-208ENST00000532560 RAD54BQ9Y620 910 aa15.49■□□□□ 0.07
CPSF1-208ENST00000532560 TMEM191CA6NGB0 347 aa15.48■□□□□ 0.07
CPSF1-208ENST00000532560 WASH3PC4AMC7 463 aa15.48■□□□□ 0.07
CPSF1-208ENST00000532560 GFRA3O60609 400 aa15.48■□□□□ 0.07
CPSF1-208ENST00000532560 GABRG2P18507 467 aa15.48■□□□□ 0.07
CPSF1-208ENST00000532560 PSMA2P25787 234 aa15.48■□□□□ 0.07
CPSF1-208ENST00000532560 EIF4A3P38919 411 aaKnown RBP15.48■□□□□ 0.07
CPSF1-208ENST00000532560 PLK1P53350 603 aa15.48■□□□□ 0.07
CPSF1-208ENST00000532560 AIF1P55008 147 aa15.48■□□□□ 0.07
CPSF1-208ENST00000532560 ZNF252P-AS1Q0IIN9 211 aa15.48■□□□□ 0.07
CPSF1-208ENST00000532560 SRSF5Q13243 272 aaKnown RBP15.48■□□□□ 0.07
CPSF1-208ENST00000532560 SIM2Q14190 667 aaPredicted RBP15.48■□□□□ 0.07
CPSF1-208ENST00000532560 TSR1Q2NL82 804 aaKnown RBP15.48■□□□□ 0.07
CPSF1-208ENST00000532560 ASTE1Q2TB18 679 aaPredicted RBP15.48■□□□□ 0.07
CPSF1-208ENST00000532560 FNDC3BQ53EP0 1204 aaKnown RBP15.48■□□□□ 0.07
CPSF1-208ENST00000532560 ALFQ53S48 1182 aa15.48■□□□□ 0.07
CPSF1-208ENST00000532560 ALKBH5Q6P6C2 394 aaKnown RBP15.48■□□□□ 0.07
CPSF1-208ENST00000532560 SETD3Q86TU7 594 aaPredicted RBP15.48■□□□□ 0.07
CPSF1-208ENST00000532560 KDM1BQ8NB78 822 aa15.48■□□□□ 0.07
CPSF1-208ENST00000532560 MRFAP1L1Q96HT8 127 aa15.48■□□□□ 0.07
CPSF1-208ENST00000532560 TPSD1Q9BZJ3 242 aa15.48■□□□□ 0.07
CPSF1-208ENST00000532560 OR12D3Q9UGF7 316 aa15.48■□□□□ 0.07
CPSF1-208ENST00000532560 PLXND1Q9Y4D7 1925 aa15.48■□□□□ 0.07
CPSF1-208ENST00000532560 DOCK4Q8N1I0 1966 aa15.47■□□□□ 0.07
CPSF1-208ENST00000532560 ZBTB24O43167 697 aaPredicted RBP15.47■□□□□ 0.07
CPSF1-208ENST00000532560 ZNF500O60304 480 aaPredicted RBP15.47■□□□□ 0.07
CPSF1-208ENST00000532560 SYNCRIPO60506 623 aaKnown RBP15.47■□□□□ 0.07
CPSF1-208ENST00000532560 CNTN5O94779 1100 aa15.47■□□□□ 0.07
CPSF1-208ENST00000532560 EPHX1P07099 455 aa15.47■□□□□ 0.07
CPSF1-208ENST00000532560 NDUFV2P19404 249 aa15.47■□□□□ 0.07
CPSF1-208ENST00000532560 ZNF75DP51815 510 aa15.47■□□□□ 0.07
CPSF1-208ENST00000532560 TERF1P54274 439 aa15.47■□□□□ 0.07
CPSF1-208ENST00000532560 ADKP55263 362 aaKnown RBP15.47■□□□□ 0.07
CPSF1-208ENST00000532560 SULT2A1Q06520 285 aa15.47■□□□□ 0.07
CPSF1-208ENST00000532560 SLC18A3Q16572 532 aa15.47■□□□□ 0.07
CPSF1-208ENST00000532560 USP39Q53GS9 565 aaKnown RBP15.47■□□□□ 0.07
CPSF1-208ENST00000532560 CCDC122Q5T0U0 273 aa15.47■□□□□ 0.07
CPSF1-208ENST00000532560 PRR23BQ6ZRT6 265 aa15.47■□□□□ 0.07
CPSF1-208ENST00000532560 CEP68Q76N32 757 aa15.47■□□□□ 0.07
CPSF1-208ENST00000532560 SLFN11Q7Z7L1 901 aa15.47■□□□□ 0.07
CPSF1-208ENST00000532560 ALYREFQ86V81 257 aaKnown RBP15.47■□□□□ 0.07
CPSF1-208ENST00000532560 C11orf74Q86VG3 221 aa15.47■□□□□ 0.07
CPSF1-208ENST00000532560 APCDD1Q8J025 514 aa15.47■□□□□ 0.07
CPSF1-208ENST00000532560 ALG14Q96F25 216 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms