RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 ZBTB34Q8NCN2 500 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 TMEM52Q8NDY8 209 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 OLIG1Q8TAK6 271 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 LNX1Q8TBB1 728 aaPredicted RBP4.4□□□□□ -1.71
CD44-226ENST00000527889 DIS3LQ8TF46 1054 aaKnown RBP4.4□□□□□ -1.71
CD44-226ENST00000527889 U2AF1L4Q8WU68 220 aaKnown RBP4.4□□□□□ -1.71
CD44-226ENST00000527889 SLC20A1Q8WUM9 679 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 SHC3Q92529 594 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 DLG3Q92796 817 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 GOLGA1Q92805 767 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 ITFG2Q969R8 447 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 JAKMIP2Q96AA8 810 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 TMEM169Q96HH4 297 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 ANKRD36BP1Q96IX9 119 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 CCDC42Q96M95 316 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 FAM193BQ96PV7 902 aaPredicted RBP4.4□□□□□ -1.71
CD44-226ENST00000527889 WDR24Q96S15 920 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 EIF3CQ99613 913 aaKnown RBP4.4□□□□□ -1.71
CD44-226ENST00000527889 FAM83CQ9BQN1 747 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 CCDC94Q9BW85 323 aaPredicted RBP4.4□□□□□ -1.71
CD44-226ENST00000527889 PACSIN1Q9BY11 444 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 KRTAP4-6Q9BYQ5 205 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 SENP6Q9GZR1 1112 aaPredicted RBP4.4□□□□□ -1.71
CD44-226ENST00000527889 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.4□□□□□ -1.71
CD44-226ENST00000527889 TRPV6Q9H1D0 765 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 NXF3Q9H4D5 531 aaKnown RBP4.4□□□□□ -1.71
CD44-226ENST00000527889 SP110Q9HB58 689 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 APOBEC3GQ9HC16 384 aaKnown RBP4.4□□□□□ -1.71
CD44-226ENST00000527889 ACP6Q9NPH0 428 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 ACSS2Q9NR19 701 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 SEPT11Q9NVA2 429 aaKnown RBP4.4□□□□□ -1.71
CD44-226ENST00000527889 DNAJC28Q9NX36 388 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 SIX4Q9UIU6 781 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 MYO6Q9UM54 1294 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 GUCA1BQ9UMX6 200 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 ST3GAL5Q9UNP4 418 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 SRPK3Q9UPE1 567 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 PCDHA13Q9Y5I0 950 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 GPR45Q9Y5Y3 372 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 DUSP10Q9Y6W6 482 aa4.4□□□□□ -1.71
CD44-226ENST00000527889 SPTBN4Q9H254 2564 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 A0A1W2PQ45 241 aaPredicted RBP4.39□□□□□ -1.71
CD44-226ENST00000527889 A0A1W2PQY0 241 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 TMEM82A0PJX8 343 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 GOLGA6L9A6NEM1 432 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 KBTBD13C9JR72 458 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 DDX3XO00571 662 aaKnown RBP eCLIP4.39□□□□□ -1.71
CD44-226ENST00000527889 SCDO00767 359 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 PPEF2O14830 753 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 CYP26A1O43174 497 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 KIF1CO43896 1103 aaKnown RBP4.39□□□□□ -1.71
CD44-226ENST00000527889 NPHS1O60500 1241 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 B4GALT4O60513 344 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 CLASP2O75122 1294 aaKnown RBP4.39□□□□□ -1.71
CD44-226ENST00000527889 RPS6KA5O75582 802 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 CABYRO75952 493 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 IPO7O95373 1038 aaKnown RBP4.39□□□□□ -1.71
CD44-226ENST00000527889 MOCS3O95396 460 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 LCA5LO95447 670 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 ASS1P00966 412 aaKnown RBP4.39□□□□□ -1.71
CD44-226ENST00000527889 CYP17A1P05093 508 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 ITGB3P05106 788 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 KRT19P08727 400 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 GHRP10912 638 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 CCL5P13501 91 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 KRT5P13647 590 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 FOSL1P15407 271 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 CHRNB2P17787 502 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 ENDOUP21128 410 aaKnown RBP4.39□□□□□ -1.71
CD44-226ENST00000527889 TNFAIP3P21580 790 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 ENPP1P22413 925 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 RRM1P23921 792 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 FPR2P25090 351 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 CD40P25942 277 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 CD52P31358 61 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 ADMP35318 185 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 MAGEA1P43355 309 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 RAP1GAPP47736 663 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 PPM1FP49593 454 aaPredicted RBP4.39□□□□□ -1.71
CD44-226ENST00000527889 VAV2P52735 878 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 MFAP3P55082 362 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 KRT83P78385 493 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 CDC42EP1Q00587 391 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 NCBP1Q09161 790 aaKnown RBP4.39□□□□□ -1.71
CD44-226ENST00000527889 MGAT3Q09327 533 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 WASHC5Q12768 1159 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 TRPC3Q13507 836 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 CUL2Q13617 745 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 KRT72Q14CN4 511 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 SLC18A3Q16572 532 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 NKPD1Q17RQ9 610 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 TRIM71Q2Q1W2 868 aaKnown RBP4.39□□□□□ -1.71
CD44-226ENST00000527889 ZNF699Q32M78 642 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 TOR2AQ5JU69 321 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 GLRA4Q5JXX5 417 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 ZNF569Q5MCW4 686 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 CCDC122Q5T0U0 273 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 UBXN11Q5T124 520 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 ZNF618Q5T7W0 954 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 CPZQ66K79 652 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms