RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 RINLQ6ZS11 566 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 PIK3AP1Q6ZUJ8 805 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 RAB11FIP2Q7L804 512 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 BCDIN3DQ7Z5W3 292 aaKnown RBP4.37□□□□□ -1.71
CD44-219ENST00000525685 ZNF354CQ86Y25 554 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 TBC1D3Q8IZP1 549 aaPredicted RBP4.37□□□□□ -1.71
CD44-219ENST00000525685 CACNA2D3Q8IZS8 1091 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 CPT1BQ92523 772 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 GOLGA1Q92805 767 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 EID2BQ96D98 161 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 TRAPPC9Q96Q05 1148 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 SIN3AQ96ST3 1273 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 THAP7Q9BT49 309 aaPredicted RBP4.37□□□□□ -1.71
CD44-219ENST00000525685 TRIM2Q9C040 744 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 SEMA4CQ9C0C4 833 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 TAF1DQ9H5J8 278 aaPredicted RBP4.37□□□□□ -1.71
CD44-219ENST00000525685 AGO4Q9HCK5 861 aaKnown RBP4.37□□□□□ -1.71
CD44-219ENST00000525685 FSCN3Q9NQT6 498 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 VPS45Q9NRW7 570 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 BAG5Q9UL15 447 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 MAFFQ9ULX9 164 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 RIPOR2Q9Y4F9 1068 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 ARHGEF28Q8N1W1 1705 aaKnown RBP4.37□□□□□ -1.71
CD44-219ENST00000525685 DLC1Q96QB1 1528 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 SIPA1L2Q9P2F8 1722 aaPredicted RBP4.36□□□□□ -1.71
CD44-219ENST00000525685 CCDC187A0A096LP49 1063 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 BTBD19C9JJ37 291 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 H7C1Q1 480 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 IRAK2O43187 625 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 PRAMEF2O60811 474 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 RPP40O75818 363 aaKnown RBP4.36□□□□□ -1.71
CD44-219ENST00000525685 LARGE1O95461 756 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 PRR35P0CG20 571 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 APEHP13798 732 aaKnown RBP4.36□□□□□ -1.71
CD44-219ENST00000525685 MATN1P21941 496 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 GRK5P34947 590 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 WDR5P61964 334 aaKnown RBP4.36□□□□□ -1.71
CD44-219ENST00000525685 RAE1P78406 368 aaKnown RBP4.36□□□□□ -1.71
CD44-219ENST00000525685 SF3A3Q12874 501 aaKnown RBP eCLIP4.36□□□□□ -1.71
CD44-219ENST00000525685 BIRC3Q13489 604 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 ADCK5Q3MIX3 580 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 FAM90A2PQ658T7 463 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 ZNF425Q6IV72 752 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 MSANTD2Q6P1R3 559 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 WDR93Q6P2C0 686 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 ACSM6Q6P461 480 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 NFRKBQ6P4R8 1299 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 RRAGAQ7L523 313 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 TRABD2AQ86V40 505 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 SLC44A2Q8IWA5 706 aaPredicted RBP4.36□□□□□ -1.71
CD44-219ENST00000525685 GALNT15Q8N3T1 639 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 OR52L2PQ8NGH6 319 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 ASB2Q96Q27 587 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 PRDM16Q9HAZ2 1276 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 LIN7CQ9NUP9 197 aaKnown RBP4.36□□□□□ -1.71
CD44-219ENST00000525685 RAB21Q9UL25 225 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 ZNF804BA4D1E1 1349 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 FNDC1Q4ZHG4 1894 aaPredicted RBP4.36□□□□□ -1.71
CD44-219ENST00000525685 LRPPRCP42704 1394 aaKnown RBP4.36□□□□□ -1.71
CD44-219ENST00000525685 YTHDC2Q9H6S0 1430 aaKnown RBP4.36□□□□□ -1.71
CD44-219ENST00000525685 ADGRL3Q9HAR2 1447 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 CDC42BPGQ6DT37 1551 aa4.36□□□□□ -1.71
CD44-219ENST00000525685 NPHP1O15259 732 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 CBFA2T3O75081 653 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 KRT38O76015 456 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 CHRM5P08912 532 aaPredicted RBP4.35□□□□□ -1.71
CD44-219ENST00000525685 DUSP1P28562 367 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 SLC8A1P32418 973 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 AARSP49588 968 aaKnown RBP eCLIP4.35□□□□□ -1.71
CD44-219ENST00000525685 TUBA4AP68366 448 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 POSTNQ15063 836 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 MTX3Q5HYI7 312 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 RANBP10Q6VN20 620 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 SRFBP1Q8NEF9 429 aaKnown RBP4.35□□□□□ -1.71
CD44-219ENST00000525685 SCAMP5Q8TAC9 235 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 AKAP1Q92667 903 aaKnown RBP eCLIP4.35□□□□□ -1.71
CD44-219ENST00000525685 RSC1A1Q92681 617 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 EDC3Q96F86 508 aaKnown RBP4.35□□□□□ -1.71
CD44-219ENST00000525685 HIC2Q96JB3 615 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 TMEM120AQ9BXJ8 343 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 MLXIPQ9HAP2 919 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 SAYSD1Q9NPB0 183 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 ABHD10Q9NUJ1 306 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 KIF17Q9P2E2 1029 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 FZD4Q9ULV1 537 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 C19orf53Q9UNZ5 99 aaPredicted RBP4.35□□□□□ -1.71
CD44-219ENST00000525685 SLC12A4Q9UP95 1085 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 CNTN6Q9UQ52 1028 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 TONSLQ96HA7 1378 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 PLEKHH1Q9ULM0 1364 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 NCOA3Q9Y6Q9 1424 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 ADGRB2O60241 1585 aa4.35□□□□□ -1.71
CD44-219ENST00000525685 PRRT4C9JH25 899 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 CYP2D6P10635 497 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 KELP23276 732 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 CERS1P27544 350 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 EPHB2P29323 1055 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 FOXO1Q12778 655 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 KPNB1Q14974 876 aaKnown RBP4.34□□□□□ -1.71
CD44-219ENST00000525685 LARS2Q15031 903 aaKnown RBP4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms