RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 BAP1Q92560 729 aa11.86□□□□□ -0.51
VCAN-212ENST00000515397 NT5C3BQ969T7 300 aa11.86□□□□□ -0.51
VCAN-212ENST00000515397 TTC17Q96AE7 1141 aa11.86□□□□□ -0.51
VCAN-212ENST00000515397 TOE1Q96GM8 510 aaKnown RBP11.86□□□□□ -0.51
VCAN-212ENST00000515397 MYO19Q96H55 970 aa11.86□□□□□ -0.51
VCAN-212ENST00000515397 MRGPRX3Q96LB0 322 aa11.86□□□□□ -0.51
VCAN-212ENST00000515397 VPS45Q9NRW7 570 aa11.86□□□□□ -0.51
VCAN-212ENST00000515397 ADAM22Q9P0K1 906 aa11.86□□□□□ -0.51
VCAN-212ENST00000515397 KIAA1522Q9P206 1035 aaPredicted RBP11.86□□□□□ -0.51
VCAN-212ENST00000515397 CDV3Q9UKY7 258 aaKnown RBP11.86□□□□□ -0.51
VCAN-212ENST00000515397 ERVW-1Q9UQF0 538 aa11.86□□□□□ -0.51
VCAN-212ENST00000515397 NUMA1Q14980 2115 aa11.86□□□□□ -0.51
VCAN-212ENST00000515397 KNL1Q8NG31 2342 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 LRRC53A6NM62 1247 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 LRP3O75074 770 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 SIN3BO75182 1162 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 NDUFS2O75306 463 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 SKILP12757 684 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 VAV1P15498 845 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 NSFP46459 744 aaKnown RBP11.85□□□□□ -0.51
VCAN-212ENST00000515397 TPMTP51580 245 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 FANCCQ00597 558 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 ZNF33AQ06730 810 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 CAMK2GQ13555 558 aaPredicted RBP11.85□□□□□ -0.51
VCAN-212ENST00000515397 BYSLQ13895 437 aaKnown RBP11.85□□□□□ -0.51
VCAN-212ENST00000515397 NR1I3Q14994 352 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 PLEKHG6Q3KR16 790 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 ZSCAN23Q3MJ62 389 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 FILIP1LQ4L180 1135 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 RABGAP1LQ5R372 815 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 RNF219Q5W0B1 726 aaPredicted RBP11.85□□□□□ -0.51
VCAN-212ENST00000515397 LYSMD4Q5XG99 296 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 CXorf57Q6NSI4 855 aaKnown RBP11.85□□□□□ -0.51
VCAN-212ENST00000515397 SND1Q7KZF4 910 aaKnown RBP eCLIP11.85□□□□□ -0.513e-8■■■■□ 22.8
VCAN-212ENST00000515397 DGLUCYQ7Z3D6 616 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 TFAP2DQ7Z6R9 452 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 MSANTD4Q8NCY6 345 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 OR2T3Q8NH03 318 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 PRCCQ92733 491 aaPredicted RBP11.85□□□□□ -0.51
VCAN-212ENST00000515397 HSPA12BQ96MM6 686 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 GPR174Q9BXC1 333 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 ITM2CQ9NQX7 267 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 ARHGEF38Q9NXL2 777 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 DLL3Q9NYJ7 618 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 STAP1Q9ULZ2 295 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 PCDHGA5Q9Y5G8 931 aa11.85□□□□□ -0.51
VCAN-212ENST00000515397 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.84□□□□□ -0.51
VCAN-212ENST00000515397 A0A1B0GTH6 734 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 PRR5-ARHGAP8B1AHC4 643 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 NPC1O15118 1278 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 AP5Z1O43299 807 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 ZNF217O75362 1048 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 F9P00740 461 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 ACADMP11310 421 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 KRT3P12035 628 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 TNFAIP3P21580 790 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 CD6P30203 668 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 RDXP35241 583 aaKnown RBP11.84□□□□□ -0.51
VCAN-212ENST00000515397 RFC1P35251 1148 aaPredicted RBP11.84□□□□□ -0.51
VCAN-212ENST00000515397 ST8SIA6P61647 398 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 RPS14P62263 151 aaKnown RBP11.84□□□□□ -0.51
VCAN-212ENST00000515397 ARHGAP8P85298 464 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 ECT2LQ008S8 904 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 ZNF177Q13360 481 aaPredicted RBP11.84□□□□□ -0.51
VCAN-212ENST00000515397 PUM1Q14671 1186 aaKnown RBP eCLIP11.84□□□□□ -0.51
VCAN-212ENST00000515397 ARTNQ5T4W7 220 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 STPG1Q5TH74 334 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 SMYD5Q6GMV2 418 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 WDR59Q6PJI9 974 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 SLC36A4Q6YBV0 504 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 C11orf74Q86VG3 221 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 ZNF683Q8IZ20 524 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 RGL4Q8IZJ4 473 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 CPLX3Q8WVH0 158 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 PGAP3Q96FM1 320 aaPredicted RBP11.84□□□□□ -0.51
VCAN-212ENST00000515397 WSB2Q9NYS7 404 aaPredicted RBP11.84□□□□□ -0.51
VCAN-212ENST00000515397 RRN3Q9NYV6 651 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 SUN2Q9UH99 717 aa11.84□□□□□ -0.51
VCAN-212ENST00000515397 A0A0D9SEW6 157 aa11.83□□□□□ -0.52
VCAN-212ENST00000515397 A0A1B0GVM2 712 aa11.83□□□□□ -0.52
VCAN-212ENST00000515397 MED19A0JLT2 244 aaPredicted RBP11.83□□□□□ -0.52
VCAN-212ENST00000515397 TCAF2A6NFQ2 919 aa11.83□□□□□ -0.52
VCAN-212ENST00000515397 C2CD4BA6NLJ0 364 aa11.83□□□□□ -0.52
VCAN-212ENST00000515397 C4orf47A7E2U8 309 aa11.83□□□□□ -0.52
VCAN-212ENST00000515397 E9PAM4 449 aa11.83□□□□□ -0.52
VCAN-212ENST00000515397 FAM72CH0Y354 149 aa11.83□□□□□ -0.52
VCAN-212ENST00000515397 KHNYNO15037 678 aaKnown RBP11.83□□□□□ -0.52
VCAN-212ENST00000515397 ATMINO43313 823 aaPredicted RBP11.83□□□□□ -0.52
VCAN-212ENST00000515397 BNIP3LO60238 219 aa11.83□□□□□ -0.52
VCAN-212ENST00000515397 SNAP91O60641 907 aa11.83□□□□□ -0.52
VCAN-212ENST00000515397 MOCS3O95396 460 aa11.83□□□□□ -0.52
VCAN-212ENST00000515397 MT-CO1P00395 513 aa11.83□□□□□ -0.52
VCAN-212ENST00000515397 CFIP05156 583 aa11.83□□□□□ -0.52
VCAN-212ENST00000515397 FERP16591 822 aa11.83□□□□□ -0.52
VCAN-212ENST00000515397 RRM1P23921 792 aa11.83□□□□□ -0.52
VCAN-212ENST00000515397 ACSL1P33121 698 aa11.83□□□□□ -0.52
VCAN-212ENST00000515397 SCNN1AP37088 669 aa11.83□□□□□ -0.52
VCAN-212ENST00000515397 MAPK8P45983 427 aa11.83□□□□□ -0.52
VCAN-212ENST00000515397 UBASH3AP57075 661 aa11.83□□□□□ -0.52
VCAN-212ENST00000515397 RPL7AP62424 266 aaKnown RBP11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms