RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 PYDC2Q56P42 97 aa8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 GPAT2Q6NUI2 795 aa8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 RGMBQ6NW40 437 aa8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 FBXO42Q6P3S6 717 aa8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 C8orf59Q8N0T1 100 aaPredicted RBP8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 SAMD3Q8N6K7 520 aa8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 PPP1R14AQ96A00 147 aa8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 TRMT13Q9NUP7 481 aaKnown RBP8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 MCUBQ9NWR8 336 aa8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 ARHGAP20Q9P2F6 1191 aa8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 ENOPH1Q9UHY7 261 aa8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 EDARQ9UNE0 448 aa8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 KDM6AO15550 1401 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 OR14I1A6ND48 311 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 RNASEH1O60930 286 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 NOL4O94818 638 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 SUPT7LO94864 414 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 HLA-DRAP01903 254 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 TCF4P15884 667 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 AP3M2P53677 418 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 RAB2AP61019 212 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 TTC23Q5W5X9 447 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 SHQ1Q6PI26 577 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 MACC1Q6ZN28 852 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 ANKS3Q6ZW76 656 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 ZBTB46Q86UZ6 589 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 DHFR2Q86XF0 187 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 DCP1BQ8IZD4 617 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 FBXW8Q8N3Y1 598 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 IPMKQ8NFU5 416 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 MOSPD2Q8NHP6 518 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 FEZF2Q8TBJ5 459 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 FAR1Q8WVX9 515 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 AP1S3Q96PC3 154 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 MND1Q9BWT6 205 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 CAB39LQ9H9S4 337 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 KLHL1Q9NR64 748 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 FAM49BQ9NUQ9 324 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 FAM240BA0A1B0GVZ2 78 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 METTL21EPA6NDL7 271 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 MYL12BO14950 172 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 NKRFO15226 690 aaKnown RBP eCLIP8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 CHP2O43745 196 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 LGR5O75473 907 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 FYNP06241 537 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 TSPAN19P0C672 248 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 ALDH1A3P47895 512 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 GLRBP48167 497 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 IFI35P80217 286 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 SP3Q02447 781 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 DGKDQ16760 1214 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 SLC45A4Q5BKX6 768 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 ZNF544Q6NX49 715 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 ARMC6Q6NXE6 501 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 FAM117BQ6P1L5 589 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 DRAXINQ8NBI3 349 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 MAGEC3Q8TD91 643 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 MYLPFQ96A32 169 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 PAFAH2Q99487 392 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 SLC39A3Q9BRY0 314 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 OSBPL6Q9BZF3 934 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 RNF38Q9H0F5 515 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 ZNF446Q9NWS9 450 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 COMMD8Q9NX08 183 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 CD274Q9NZQ7 290 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 PNMA8BQ9ULN7 279 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 NAALADL1Q9UQQ1 740 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 PKP3Q9Y446 797 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 RPS6KL1Q9Y6S9 549 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 SLCO1B7G3V0H7 640 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 FCHO1O14526 889 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 GABBR2O75899 941 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 URODP06132 367 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 PDGFRBP09619 1106 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 MYL12AP19105 171 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 FGFR2P21802 821 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 PTGER2P43116 358 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 KPNA1P52294 538 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 DEFA5Q01523 94 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 NFYCQ13952 458 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 C11orf63Q6NUN7 778 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 TMEM26Q6ZUK4 368 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 RNF148Q8N7C7 305 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 MTMR8Q96EF0 704 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 NSMCE2Q96MF7 247 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 SLC9A7Q96T83 725 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 DCLK3Q9C098 648 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 DEFB129Q9H1M3 183 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 RAD18Q9NS91 495 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 PNPLA3Q9NST1 481 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 CDH9Q9ULB4 789 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 OGDHLQ9ULD0 1010 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 AXIN2Q9Y2T1 843 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 MAGEB16A2A368 324 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 NDUFB5O43674 189 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 HIST1H2AGP0C0S8 130 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 HIST1H2ADP20671 130 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 ITGALP20701 1170 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 NPTX2P47972 431 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 PRR5LQ6MZQ0 368 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms