RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, human

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-215	ENST00000511843	AP5Z1	O43299	807 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	ZNF217	O75362	1048 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	CNTN5	O94779	1100 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	UNG	P13051	313 aa	Predicted RBP	13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	SCNN1A	P37088	669 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	CXCR3	P49682	368 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	STK19	P49842	368 aa	Predicted RBP	13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	TPMT	P51580	245 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	ZNF33A	Q06730	810 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	PTP4A2	Q12974	167 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	CDO1	Q16878	200 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	C15orf59	Q2T9L4	293 aa	Predicted RBP	13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	PLEKHG6	Q3KR16	790 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	SLC25A52	Q3SY17	297 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	RABGAP1L	Q5R372	815 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	SH3PXD2A	Q5TCZ1	1133 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	LYSMD4	Q5XG99	296 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	CXorf57	Q6NSI4	855 aa	Known RBP	13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	SLC36A4	Q6YBV0	504 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	LUZP1	Q86V48	1076 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	FAM131B	Q86XD5	332 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	MSANTD4	Q8NCY6	345 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	OR2T3	Q8NH03	318 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	PRCC	Q92733	491 aa	Predicted RBP	13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	NT5C3B	Q969T7	300 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	TTC17	Q96AE7	1141 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	TOE1	Q96GM8	510 aa	Known RBP	13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	MRGPRX3	Q96LB0	322 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	EDEM2	Q9BV94	578 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	GPR174	Q9BXC1	333 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	WDCP	Q9H6R7	721 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	ARHGEF38	Q9NXL2	777 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	KIAA1522	Q9P206	1035 aa	Predicted RBP	13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	USP36	Q9P275	1121 aa	Known RBP	13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	SLCO3A1	Q9UIG8	710 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	ERVW-1	Q9UQF0	538 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	TMEM131	Q92545	1883 aa		13.7	□□□□□ -0.22
RNF4-215	ENST00000511843		A0A1B0GVM2	712 aa		13.7	□□□□□ -0.22
RNF4-215	ENST00000511843	MED19	A0JLT2	244 aa	Predicted RBP	13.7	□□□□□ -0.22
RNF4-215	ENST00000511843	TCAF2	A6NFQ2	919 aa		13.7	□□□□□ -0.22
RNF4-215	ENST00000511843	SLC30A4	O14863	429 aa		13.7	□□□□□ -0.22
RNF4-215	ENST00000511843	NDUFS2	O75306	463 aa		13.7	□□□□□ -0.22
RNF4-215	ENST00000511843	KCNA4	P22459	653 aa		13.7	□□□□□ -0.22
RNF4-215	ENST00000511843	MAOB	P27338	520 aa		13.7	□□□□□ -0.22
RNF4-215	ENST00000511843	CD6	P30203	668 aa		13.7	□□□□□ -0.22
RNF4-215	ENST00000511843	IRX4	P78413	519 aa		13.7	□□□□□ -0.22
RNF4-215	ENST00000511843	CLEC16A	Q2KHT3	1053 aa		13.7	□□□□□ -0.22
RNF4-215	ENST00000511843	ALF	Q53S48	1182 aa		13.7	□□□□□ -0.22
RNF4-215	ENST00000511843	STPG1	Q5TH74	334 aa		13.7	□□□□□ -0.22
RNF4-215	ENST00000511843	SND1	Q7KZF4	910 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
RNF4-215	ENST00000511843	ZNF557	Q8N988	423 aa	Predicted RBP	13.7	□□□□□ -0.22
RNF4-215	ENST00000511843	BAP1	Q92560	729 aa		13.7	□□□□□ -0.22
RNF4-215	ENST00000511843	AGPAT1	Q99943	283 aa		13.7	□□□□□ -0.22
RNF4-215	ENST00000511843	CBX8	Q9HC52	389 aa		13.7	□□□□□ -0.22
RNF4-215	ENST00000511843	ITM2C	Q9NQX7	267 aa		13.7	□□□□□ -0.22
RNF4-215	ENST00000511843	RRN3	Q9NYV6	651 aa		13.7	□□□□□ -0.22
RNF4-215	ENST00000511843	DAAM1	Q9Y4D1	1078 aa		13.7	□□□□□ -0.22
RNF4-215	ENST00000511843	DOCK9	Q9BZ29	2069 aa		13.7	□□□□□ -0.22
RNF4-215	ENST00000511843	KHNYN	O15037	678 aa	Known RBP	13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	SIN3B	O75182	1162 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	MOCS3	O95396	460 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	ASL	P04424	464 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	CFI	P05156	583 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	ACADM	P11310	421 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	VAV1	P15498	845 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	NSF	P46459	744 aa	Known RBP	13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	ST8SIA6	P61647	398 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	RPS14	P62263	151 aa	Known RBP	13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	ECT2L	Q008S8	904 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	E2F5	Q15329	346 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	TRIM61	Q5EBN2	209 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	BRMS1L	Q5PSV4	323 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	ARTN	Q5T4W7	220 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	E4F1	Q66K89	784 aa	Predicted RBP	13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	TRIM72	Q6ZMU5	477 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	DNAAF5	Q86Y56	855 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	SYT12	Q8IV01	421 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	ZNF683	Q8IZ20	524 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	RXFP2	Q8WXD0	754 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	PGAP3	Q96FM1	320 aa	Predicted RBP	13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	RTKN	Q9BST9	563 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	MAGEB5	Q9BZ81	275 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	WSB2	Q9NYS7	404 aa	Predicted RBP	13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	TAS2R14	Q9NYV8	317 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	MPP6	Q9NZW5	540 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	ADAM22	Q9P0K1	906 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	PILRB	Q9UKJ0	227 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	CHD5	Q8TDI0	1954 aa		13.69	□□□□□ -0.22
RNF4-215	ENST00000511843	ASCC3	Q8N3C0	2202 aa	Known RBP	13.68	□□□□□ -0.22
RNF4-215	ENST00000511843	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	13.68	□□□□□ -0.22
RNF4-215	ENST00000511843		A0A1B0GTH6	734 aa		13.68	□□□□□ -0.22
RNF4-215	ENST00000511843	LRRC53	A6NM62	1247 aa		13.68	□□□□□ -0.22
RNF4-215	ENST00000511843	C4orf47	A7E2U8	309 aa		13.68	□□□□□ -0.22
RNF4-215	ENST00000511843	TMCO5B	A8MYB1	307 aa		13.68	□□□□□ -0.22
RNF4-215	ENST00000511843	SRGAP2	O75044	1071 aa		13.68	□□□□□ -0.22
RNF4-215	ENST00000511843	F9	P00740	461 aa		13.68	□□□□□ -0.22
RNF4-215	ENST00000511843	SERPINC1	P01008	464 aa		13.68	□□□□□ -0.22
RNF4-215	ENST00000511843	RDX	P35241	583 aa	Known RBP	13.68	□□□□□ -0.22
RNF4-215	ENST00000511843	ZNF177	Q13360	481 aa	Predicted RBP	13.68	□□□□□ -0.22
RNF4-215	ENST00000511843	HNRNPA1L2	Q32P51	320 aa	Known RBP	13.68	□□□□□ -0.22

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