RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 AKAP10O43572 662 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 DEAF1O75398 565 aaPredicted RBP12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 DBTP11182 482 aaKnown RBP12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 ACOT2P49753 483 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 MAP3K7CLP57077 242 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 POU6F2P78424 691 aaPredicted RBP12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 NIPAL4Q0D2K0 466 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 DPYSQ14117 519 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 PLCL1Q15111 1095 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 BOLA3Q53S33 107 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 PPP4R4Q6NUP7 873 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 UBR7Q8N806 425 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 MINDY2Q8NBR6 621 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 TNIP2Q8NFZ5 429 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 SLC44A1Q8WWI5 657 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 MAGED4Q96JG8 741 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 DMRTB1Q96MA1 342 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 CLPBQ9H078 707 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 DUS2Q9NX74 493 aaKnown RBP12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 RNF103-CHMP3A0A140T963 221 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 NDUFS2O75306 463 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 MED24O75448 989 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 TIPRLO75663 272 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 RFPL2O75678 378 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 AMHP03971 560 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 SNRPAP09012 282 aaKnown RBP12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 FMO1Q01740 532 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 TRIM71Q2Q1W2 868 aaKnown RBP12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 TTC39BQ5VTQ0 682 aaPredicted RBP12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 USP17L6PQ6QN14 398 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 FKBP9P1Q75LS8 142 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 HAS1Q92839 578 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 TP53INP1Q96A56 240 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 DACT3Q96B18 629 aaPredicted RBP12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 CEP95Q96GE4 821 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 FBXL20Q96IG2 436 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 ZNF560Q96MR9 790 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 RIOK1Q9BRS2 568 aaKnown RBP12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 WDR12Q9GZL7 423 aaKnown RBP12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 RNPEPQ9H4A4 650 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 SFMBT1Q9UHJ3 866 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 CNOT11Q9UKZ1 510 aaKnown RBP12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 ZHX2Q9Y6X8 837 aa12.31□□□□□ -0.44
LIMCH1-213ENST00000511496 CNTNAP2Q9UHC6 1331 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 NRP1O14786 923 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 RAD51BO15315 384 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 ZW10O43264 779 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 B4GAT1O43505 415 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 FAM189A1O60320 539 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 GCATO75600 419 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 POLR2CP19387 275 aaPredicted RBP12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 ARPP19P56211 112 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 SPCS2Q15005 226 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 NHSL2Q5HYW2 709 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 AGAP9Q5VTM2 703 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 OR2T3Q8NH03 318 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 TFAP2CQ92754 450 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 DLG3Q92796 817 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 SLC10A4Q96EP9 437 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 CSF3RQ99062 836 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 MTRRQ9UBK8 725 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 XPO7Q9UIA9 1087 aaKnown RBP12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 PRPF19Q9UMS4 504 aaKnown RBP12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 PCDHAC2Q9Y5I4 1007 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 CASZ1Q86V15 1759 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 A0A1W2PQ72 361 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 A8MV72 311 aaPredicted RBP12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 B8ZZF3 427 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 HDAC3O15379 428 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 TPST1O60507 370 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 FKBP9O95302 570 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 GFAPP14136 432 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 ARNTP27540 789 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 TCEAL1Q15170 157 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 PIGGQ5H8A4 983 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 TATDN1Q6P1N9 297 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 KIAA0408Q6ZU52 694 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 SLCO6A1Q86UG4 719 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 LSMEM2Q8N112 164 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 POC5Q8NA72 575 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 LEMD2Q8NC56 503 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 C7orf57Q8NEG2 295 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 LILRB1Q8NHL6 650 aaPredicted RBP12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 CPA5Q8WXQ8 436 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 DYNLL2Q96FJ2 89 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 FAM20AQ96MK3 541 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 SOX17Q9H6I2 414 aaPredicted RBP12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 MKNK2Q9HBH9 465 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 KDM3AQ9Y4C1 1321 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 BBOX1O75936 387 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 CTRB1P17538 263 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 ATF4P18848 351 aaPredicted RBP12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 L1CAMP32004 1257 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 NFX1Q12986 1120 aaKnown RBP12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 GJC2Q5T442 439 aaPredicted RBP12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 TEDDM1Q5T9Z0 273 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 CTRB2Q6GPI1 263 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms