RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 KIAA1522Q9P206 1035 aaPredicted RBP25.47■■□□□ 1.67
UPF3A-209ENST00000492270 A0A1B0GVM2 712 aa25.46■■□□□ 1.67
UPF3A-209ENST00000492270 TCAF2A6NFQ2 919 aa25.46■■□□□ 1.67
UPF3A-209ENST00000492270 CAVIN2O95810 425 aa25.46■■□□□ 1.67
UPF3A-209ENST00000492270 PDGFRAP16234 1089 aa25.46■■□□□ 1.67
UPF3A-209ENST00000492270 FERP16591 822 aa25.46■■□□□ 1.67
UPF3A-209ENST00000492270 NSFP46459 744 aaKnown RBP25.46■■□□□ 1.67
UPF3A-209ENST00000492270 PLEKHG6Q3KR16 790 aa25.46■■□□□ 1.67
UPF3A-209ENST00000492270 AASDHQ4L235 1098 aaPredicted RBP25.46■■□□□ 1.67
UPF3A-209ENST00000492270 TTC39BQ5VTQ0 682 aaPredicted RBP25.46■■□□□ 1.67
UPF3A-209ENST00000492270 CXorf57Q6NSI4 855 aaKnown RBP25.46■■□□□ 1.67
UPF3A-209ENST00000492270 SND1Q7KZF4 910 aaKnown RBP eCLIP25.46■■□□□ 1.67
UPF3A-209ENST00000492270 C12orf50Q8NA57 414 aaPredicted RBP25.46■■□□□ 1.67
UPF3A-209ENST00000492270 SIPA1Q96FS4 1042 aa25.46■■□□□ 1.67
UPF3A-209ENST00000492270 USP36Q9P275 1121 aaKnown RBP25.46■■□□□ 1.67
UPF3A-209ENST00000492270 LRRC53A6NM62 1247 aa25.45■■□□□ 1.66
UPF3A-209ENST00000492270 PATE3B3GLJ2 98 aa25.45■■□□□ 1.66
UPF3A-209ENST00000492270 F9P00740 461 aa25.45■■□□□ 1.66
UPF3A-209ENST00000492270 SERPINC1P01008 464 aa25.45■■□□□ 1.66
UPF3A-209ENST00000492270 PTMSP20962 102 aa25.45■■□□□ 1.66
UPF3A-209ENST00000492270 MZF1P28698 734 aaPredicted RBP25.45■■□□□ 1.66
UPF3A-209ENST00000492270 ATP11AP98196 1134 aa25.45■■□□□ 1.66
UPF3A-209ENST00000492270 C15orf59Q2T9L4 293 aaPredicted RBP25.45■■□□□ 1.66
UPF3A-209ENST00000492270 ZSCAN23Q3MJ62 389 aa25.45■■□□□ 1.66
UPF3A-209ENST00000492270 SLC36A4Q6YBV0 504 aa25.45■■□□□ 1.66
UPF3A-209ENST00000492270 ARCQ7LC44 396 aa25.45■■□□□ 1.66
UPF3A-209ENST00000492270 IRF2BP2Q7Z5L9 587 aa25.45■■□□□ 1.66
UPF3A-209ENST00000492270 PHF13Q86YI8 300 aaPredicted RBP25.45■■□□□ 1.66
UPF3A-209ENST00000492270 OR52K2Q8NGK3 314 aa25.45■■□□□ 1.66
UPF3A-209ENST00000492270 OR2T3Q8NH03 318 aa25.45■■□□□ 1.66
UPF3A-209ENST00000492270 PIGKQ92643 395 aa25.45■■□□□ 1.66
UPF3A-209ENST00000492270 PRCCQ92733 491 aaPredicted RBP25.45■■□□□ 1.66
UPF3A-209ENST00000492270 PRSS16Q9NQE7 514 aa25.45■■□□□ 1.66
UPF3A-209ENST00000492270 ADAM22Q9P0K1 906 aa25.45■■□□□ 1.66
UPF3A-209ENST00000492270 CDV3Q9UKY7 258 aaKnown RBP25.45■■□□□ 1.66
UPF3A-209ENST00000492270 ERVW-1Q9UQF0 538 aa25.45■■□□□ 1.66
UPF3A-209ENST00000492270 A0A1W2PQC6 194 aa25.44■■□□□ 1.66
UPF3A-209ENST00000492270 AP5Z1O43299 807 aa25.44■■□□□ 1.66
UPF3A-209ENST00000492270 ASLP04424 464 aa25.44■■□□□ 1.66
UPF3A-209ENST00000492270 RDXP35241 583 aaKnown RBP25.44■■□□□ 1.66
UPF3A-209ENST00000492270 CDO1Q16878 200 aa25.44■■□□□ 1.66
UPF3A-209ENST00000492270 SH3PXD2AQ5TCZ1 1133 aa25.44■■□□□ 1.66
UPF3A-209ENST00000492270 LYSMD4Q5XG99 296 aa25.44■■□□□ 1.66
UPF3A-209ENST00000492270 E4F1Q66K89 784 aaPredicted RBP25.44■■□□□ 1.66
UPF3A-209ENST00000492270 MON1BQ7L1V2 547 aa25.44■■□□□ 1.66
UPF3A-209ENST00000492270 METTL3Q86U44 580 aaKnown RBP25.44■■□□□ 1.66
UPF3A-209ENST00000492270 FAM131BQ86XD5 332 aa25.44■■□□□ 1.66
UPF3A-209ENST00000492270 SLC41A1Q8IVJ1 513 aa25.44■■□□□ 1.66
UPF3A-209ENST00000492270 ZNF683Q8IZ20 524 aa25.44■■□□□ 1.66
UPF3A-209ENST00000492270 RXFP2Q8WXD0 754 aa25.44■■□□□ 1.66
UPF3A-209ENST00000492270 ITM2CQ9NQX7 267 aa25.44■■□□□ 1.66
UPF3A-209ENST00000492270 TMEM74BQ9NUR3 256 aa25.44■■□□□ 1.66
UPF3A-209ENST00000492270 CNTN5O94779 1100 aa25.43■■□□□ 1.66
UPF3A-209ENST00000492270 MOCS3O95396 460 aa25.43■■□□□ 1.66
UPF3A-209ENST00000492270 ITPKAP23677 461 aa25.43■■□□□ 1.66
UPF3A-209ENST00000492270 TPMTP51580 245 aa25.43■■□□□ 1.66
UPF3A-209ENST00000492270 MTA1Q13330 715 aa25.43■■□□□ 1.66
UPF3A-209ENST00000492270 PUM1Q14671 1186 aaKnown RBP eCLIP25.43■■□□□ 1.66
UPF3A-209ENST00000492270 NR1I3Q14994 352 aa25.43■■□□□ 1.66
UPF3A-209ENST00000492270 C5orf22Q49AR2 442 aa25.43■■□□□ 1.66
UPF3A-209ENST00000492270 NETO1Q8TDF5 533 aa25.43■■□□□ 1.66
UPF3A-209ENST00000492270 RPL10LQ96L21 214 aaKnown RBP25.43■■□□□ 1.66
UPF3A-209ENST00000492270 SYT11Q9BT88 431 aa25.43■■□□□ 1.66
UPF3A-209ENST00000492270 MYO6Q9UM54 1294 aa25.43■■□□□ 1.66
UPF3A-209ENST00000492270 C2CD4BA6NLJ0 364 aa25.42■■□□□ 1.66
UPF3A-209ENST00000492270 TTC34A8MYJ7 566 aa25.42■■□□□ 1.66
UPF3A-209ENST00000492270 FOXD2O60548 495 aaPredicted RBP25.42■■□□□ 1.66
UPF3A-209ENST00000492270 CD6P30203 668 aa25.42■■□□□ 1.66
UPF3A-209ENST00000492270 STK19P49842 368 aaPredicted RBP25.42■■□□□ 1.66
UPF3A-209ENST00000492270 GSCP56915 257 aaPredicted RBP25.42■■□□□ 1.66
UPF3A-209ENST00000492270 ST8SIA6P61647 398 aa25.42■■□□□ 1.66
UPF3A-209ENST00000492270 FANCCQ00597 558 aa25.42■■□□□ 1.66
UPF3A-209ENST00000492270 CCDC14Q49A88 953 aa25.42■■□□□ 1.66
UPF3A-209ENST00000492270 ALFQ53S48 1182 aa25.42■■□□□ 1.66
UPF3A-209ENST00000492270 SPDYCQ5MJ68 293 aa25.42■■□□□ 1.66
UPF3A-209ENST00000492270 ARTNQ5T4W7 220 aa25.42■■□□□ 1.66
UPF3A-209ENST00000492270 HSPA12BQ96MM6 686 aa25.42■■□□□ 1.66
UPF3A-209ENST00000492270 TTYH3Q9C0H2 523 aa25.42■■□□□ 1.66
UPF3A-209ENST00000492270 WSB2Q9NYS7 404 aaPredicted RBP25.42■■□□□ 1.66
UPF3A-209ENST00000492270 SLCO3A1Q9UIG8 710 aa25.42■■□□□ 1.66
UPF3A-209ENST00000492270 PAXBP1Q9Y5B6 917 aa25.42■■□□□ 1.66
UPF3A-209ENST00000492270 ENDOD1O94919 500 aa25.41■■□□□ 1.66
UPF3A-209ENST00000492270 CALB1P05937 261 aa25.41■■□□□ 1.66
UPF3A-209ENST00000492270 ACADMP11310 421 aa25.41■■□□□ 1.66
UPF3A-209ENST00000492270 SDC4P31431 198 aa25.41■■□□□ 1.66
UPF3A-209ENST00000492270 ECT2LQ008S8 904 aa25.41■■□□□ 1.66
UPF3A-209ENST00000492270 ZNF33AQ06730 810 aa25.41■■□□□ 1.66
UPF3A-209ENST00000492270 SLC12A1Q13621 1099 aa25.41■■□□□ 1.66
UPF3A-209ENST00000492270 ALG14Q96F25 216 aa25.41■■□□□ 1.66
UPF3A-209ENST00000492270 TOE1Q96GM8 510 aaKnown RBP25.41■■□□□ 1.66
UPF3A-209ENST00000492270 SELENOOQ9BVL4 669 aa25.41■■□□□ 1.66
UPF3A-209ENST00000492270 TAS2R14Q9NYV8 317 aa25.41■■□□□ 1.66
UPF3A-209ENST00000492270 SUN2Q9UH99 717 aa25.41■■□□□ 1.66
UPF3A-209ENST00000492270 CACNA1AO00555 2505 aa25.4■■□□□ 1.66
UPF3A-209ENST00000492270 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP25.4■■□□□ 1.66
UPF3A-209ENST00000492270 SIN3BO75182 1162 aa25.4■■□□□ 1.66
UPF3A-209ENST00000492270 NDUFS2O75306 463 aa25.4■■□□□ 1.66
UPF3A-209ENST00000492270 SRPRAP08240 638 aaKnown RBP25.4■■□□□ 1.66
UPF3A-209ENST00000492270 CCDC172P0C7W6 258 aa25.4■■□□□ 1.66
UPF3A-209ENST00000492270 KRT3P12035 628 aa25.4■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms