RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 NFU1Q9UMS0 254 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 PCDHB7Q9Y5E2 793 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 NOS1P29475 1434 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 KCPQ6ZWJ8 1503 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 PLCH1Q4KWH8 1693 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 CTTNBP2Q8WZ74 1663 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 PTPN23Q9H3S7 1636 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 SPATA31A5Q5VU36 1347 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 SPATA31A7Q8IWB4 1347 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 IGSF1Q8N6C5 1336 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 ABCA3Q99758 1704 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 CCDC187A0A096LP49 1063 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 DPPA5A6NC42 116 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 OR2W5A6NFC9 320 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 MYMKA6NI61 221 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 F8W810 466 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 INO80B-WBP1J3KQ70 363 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 SOCS2O14508 198 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 ADAM10O14672 748 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 TP73O15350 636 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 FFAR2O15552 330 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 CTIFO43310 598 aaKnown RBP2.46□□□□□ -2.02
HMGB1-208ENST00000490788 PLA2G6O60733 806 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 ZC3H11AO75152 810 aaKnown RBP eCLIP2.46□□□□□ -2.02
HMGB1-208ENST00000490788 MOSPD3O75425 235 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 TOP3BO95985 862 aaKnown RBP2.46□□□□□ -2.02
HMGB1-208ENST00000490788 IGKV2-30P06310 120 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 ENO1P06733 434 aaKnown RBP2.46□□□□□ -2.02
HMGB1-208ENST00000490788 ALADP13716 330 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 AKR1A1P14550 325 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 ST6GAL1P15907 406 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 ATF7P17544 494 aaPredicted RBP2.46□□□□□ -2.02
HMGB1-208ENST00000490788 TFEBP19484 476 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 NDUFS1P28331 727 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 HOXD12P35452 270 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 KCNJ4P48050 445 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 AGTR2P50052 363 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 POLGP54098 1239 aaPredicted RBP2.46□□□□□ -2.02
HMGB1-208ENST00000490788 RNASELQ05823 741 aaKnown RBP2.46□□□□□ -2.02
HMGB1-208ENST00000490788 OS9Q13438 667 aaPredicted RBP2.46□□□□□ -2.02
HMGB1-208ENST00000490788 RBMS2Q15434 407 aaKnown RBP2.46□□□□□ -2.02
HMGB1-208ENST00000490788 SEC23BQ15437 767 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 MAP9Q49MG5 647 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 DGKKQ5KSL6 1271 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 ATPAF1Q5TC12 328 aaPredicted RBP2.46□□□□□ -2.02
HMGB1-208ENST00000490788 FAM90A2PQ658T7 463 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 WDR93Q6P2C0 686 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 PGBD2Q6P3X8 592 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 FAM57BQ71RH2 274 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 PIM3Q86V86 326 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 MYLK4Q86YV6 388 aaPredicted RBP2.46□□□□□ -2.02
HMGB1-208ENST00000490788 FAM47BQ8NA70 645 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 ZNF527Q8NB42 609 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 ADPRHL1Q8NDY3 354 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 C16orf52Q8NHV5 167 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 SCARB1Q8WTV0 552 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 GLMPQ8WWB7 406 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 CELF1Q92879 486 aaKnown RBP2.46□□□□□ -2.02
HMGB1-208ENST00000490788 SECISBP2LQ93073 1101 aaKnown RBP2.46□□□□□ -2.02
HMGB1-208ENST00000490788 GJA10Q969M2 543 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 TRMT61AQ96FX7 289 aaKnown RBP2.46□□□□□ -2.02
HMGB1-208ENST00000490788 LTV1Q96GA3 475 aaPredicted RBP2.46□□□□□ -2.02
HMGB1-208ENST00000490788 REXO5Q96IC2 774 aaKnown RBP2.46□□□□□ -2.02
HMGB1-208ENST00000490788 TMEM79Q9BSE2 394 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 TUBB6Q9BUF5 446 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 ABHD14AQ9BUJ0 271 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 SPRTNQ9H040 489 aaPredicted RBP2.46□□□□□ -2.02
HMGB1-208ENST00000490788 RXFP3Q9NSD7 469 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 POT1Q9NUX5 634 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 TMEM184CQ9NVA4 438 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 TMEM45AQ9NWC5 275 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 MTMR4Q9NYA4 1195 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 DTNAQ9Y4J8 743 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 CHD2O14647 1828 aaKnown RBP2.46□□□□□ -2.02
HMGB1-208ENST00000490788 ADGRB3O60242 1522 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 PLEKHG2Q9H7P9 1386 aa2.46□□□□□ -2.02
HMGB1-208ENST00000490788 PXDNLA1KZ92 1463 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 C1orf167Q5SNV9 1468 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 EMSYQ7Z589 1322 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 CLIP1P30622 1438 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 C10orf71Q711Q0 1435 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 TOPAZ1Q8N9V7 1692 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 TBC1D3DA0A087WVF3 549 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 TBC1D3IA0A087WXS9 549 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 TBC1D3EA0A087X179 549 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 TBC1D3KA0A087X1G2 549 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 TBC1D3BA6NDS4 549 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 TBC1D3FA6NER0 549 aaPredicted RBP2.45□□□□□ -2.02
HMGB1-208ENST00000490788 TBC1D3LB9A6J9 549 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 PRPF4O43172 522 aaKnown RBP eCLIP2.45□□□□□ -2.02
HMGB1-208ENST00000490788 UGDHO60701 494 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 CBFA2T3O75081 653 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 SKAP2O75563 359 aaPredicted RBP2.45□□□□□ -2.02
HMGB1-208ENST00000490788 NTSR2O95665 410 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 SYF2O95926 243 aaKnown RBP2.45□□□□□ -2.02
HMGB1-208ENST00000490788 ALDOAP04075 364 aaKnown RBP2.45□□□□□ -2.02
HMGB1-208ENST00000490788 ITGA5P08648 1049 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 TBC1D3HP0C7X1 549 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 SETSIPP0DME0 302 aa2.45□□□□□ -2.02
HMGB1-208ENST00000490788 CTSAP10619 480 aa2.45□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms