RNA–Protein interactions for RNA: ENST00000487401.1

SREBF1-215, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-215	ENST00000487401	PDGFRA	P16234	1089 aa		12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	CD27	P26842	260 aa		12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	FAM193A	P78312	1265 aa		12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	SLC6A3	Q01959	620 aa		12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	SULT2A1	Q06520	285 aa		12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	SUZ12	Q15022	739 aa	Known RBP	12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	CST6	Q15828	149 aa		12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	FAM183BP	Q6ZVS7	135 aa		12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	ADAT2	Q7Z6V5	191 aa	Known RBP	12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	SLC47A2	Q86VL8	602 aa		12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	MMAA	Q8IVH4	418 aa	Known RBP	12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	APCDD1	Q8J025	514 aa		12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	C1orf216	Q8TAB5	229 aa		12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	BIRC7	Q96CA5	298 aa		12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	MYO19	Q96H55	970 aa		12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	OMD	Q99983	421 aa		12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	NUP62CL	Q9H1M0	184 aa		12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	IL21R	Q9HBE5	538 aa		12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	TM9SF3	Q9HD45	589 aa		12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	SIX2	Q9NPC8	291 aa		12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	OSGEP	Q9NPF4	335 aa		12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	SLCO3A1	Q9UIG8	710 aa		12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	AJAP1	Q9UKB5	411 aa	Predicted RBP	12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	NEUROG3	Q9Y4Z2	214 aa		12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	TPR	P12270	2363 aa	Known RBP	12.85	□□□□□ -0.35
SREBF1-215	ENST00000487401	MYOF	Q9NZM1	2061 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	KIAA1549L	Q6ZVL6	1849 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	LRRC72	A6NJI9	287 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	MID1	O15344	667 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	ERBB2	P04626	1255 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	ZNF883	P0CG24	379 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	PNMA6A	P0CW24	399 aa	Predicted RBP	12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	SLC8A1	P32418	973 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	NOS2	P35228	1153 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	CLCN1	P35523	988 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	PSMD8	P48556	350 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	RNASE9	P60153	205 aa	Known RBP	12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	BNC1	Q01954	994 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	ZNF177	Q13360	481 aa	Predicted RBP	12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	EIF4EBP2	Q13542	120 aa	Predicted RBP	12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	AUH	Q13825	339 aa	Known RBP	12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	RAPGEF1	Q13905	1077 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	KIF19	Q2TAC6	998 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	DPCR1	Q3MIW9	517 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	HSP90AA4P	Q58FG1	418 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	KIAA0895L	Q68EN5	471 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	FBXL22	Q6P050	247 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	CIR1	Q86X95	450 aa	Predicted RBP	12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	ZDHHC17	Q8IUH5	632 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	FAM71A	Q8IYT1	594 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	CCAR2	Q8N163	923 aa	Known RBP	12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	CHCHD4	Q8N4Q1	142 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	TMEM35B	Q8NCS4	154 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	RPL10L	Q96L21	214 aa	Known RBP	12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	RPRD1A	Q96P16	312 aa	Predicted RBP	12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	PRMT1	Q99873	361 aa	Known RBP	12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	NEUROG2	Q9H2A3	272 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	PLCB1	Q9NQ66	1216 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	TM7SF3	Q9NS93	570 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	RRN3	Q9NYV6	651 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	ANKRD6	Q9Y2G4	727 aa		12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	CNOT1	A5YKK6	2376 aa	Known RBP	12.84	□□□□□ -0.35
SREBF1-215	ENST00000487401	CHD8	Q9HCK8	2581 aa		12.83	□□□□□ -0.35
SREBF1-215	ENST00000487401	MYO16	Q9Y6X6	1858 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401		A0A1B0GVM2	712 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401		A0A1W2PP55	124 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	TMEM8B	A6NDV4	472 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	TCAF2	A6NFQ2	919 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401		M0QYT0	321 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	DAB1	O75553	588 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	ADH1B	P00325	375 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	IL1B	P01584	269 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	MZF1	P28698	734 aa	Predicted RBP	12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	STK19	P49842	368 aa	Predicted RBP	12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	GALC	P54803	685 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	C21orf59	P57076	290 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	KCNJ12	Q14500	433 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	DRAP1	Q14919	205 aa	Predicted RBP	12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	PTPN20	Q4JDL3	420 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	CT47A1	Q5JQC4	288 aa	Predicted RBP	12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	KLHDC7A	Q5VTJ3	777 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	OLFML1	Q6UWY5	402 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	SND1	Q7KZF4	910 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	SLC26A9	Q7LBE3	791 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	STK40	Q8N2I9	435 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	ZNF397	Q8NF99	534 aa	Predicted RBP	12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	SKA1	Q96BD8	255 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	FAM129B	Q96TA1	746 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	SIK2	Q9H0K1	926 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	KLK13	Q9UKR3	277 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	PCOLCE2	Q9UKZ9	415 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	VANGL2	Q9ULK5	521 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	APOBEC2	Q9Y235	224 aa	Known RBP	12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	FNDC3A	Q9Y2H6	1198 aa	Known RBP	12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	MSRB2	Q9Y3D2	182 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	PCDHGB2	Q9Y5G2	931 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	SNX11	Q9Y5W9	270 aa		12.83	□□□□□ -0.36
SREBF1-215	ENST00000487401	HS3ST4	Q9Y661	456 aa		12.83	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms