RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ARHGEF4Q9NR80 690 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 GTSE1Q9NYZ3 720 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 MARK1Q9P0L2 795 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 SNX12Q9UMY4 172 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 NEU3Q9UQ49 428 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 MYO18AQ92614 2054 aaKnown RBP12.6□□□□□ -0.39
SDC1-206ENST00000482879 CHD5Q8TDI0 1954 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 SHROOM3Q8TF72 1996 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 NCOR1O75376 2440 aa12.59□□□□□ -0.39
SDC1-206ENST00000482879 hCG_1818297A0A087WSY0 165 aa12.59□□□□□ -0.39
SDC1-206ENST00000482879 WASH4PA8MWX3 477 aa12.59□□□□□ -0.39
SDC1-206ENST00000482879 H0Y626 953 aa12.59□□□□□ -0.39
SDC1-206ENST00000482879 ARNTLO00327 626 aa12.59□□□□□ -0.39
SDC1-206ENST00000482879 FANCGO15287 622 aa12.59□□□□□ -0.39
SDC1-206ENST00000482879 HOXC11O43248 304 aaPredicted RBP12.59□□□□□ -0.39
SDC1-206ENST00000482879 CEP104O60308 925 aa12.59□□□□□ -0.39
SDC1-206ENST00000482879 LUC7L3O95232 432 aaKnown RBP12.59□□□□□ -0.39
SDC1-206ENST00000482879 PENKP01210 267 aaPredicted RBP12.59□□□□□ -0.39
SDC1-206ENST00000482879 KRT10P13645 584 aa12.59□□□□□ -0.39
SDC1-206ENST00000482879 HOXD9P28356 352 aaPredicted RBP12.59□□□□□ -0.39
SDC1-206ENST00000482879 PPP2R5EQ16537 467 aa12.59□□□□□ -0.39
SDC1-206ENST00000482879 PAPD7Q5XG87 772 aaKnown RBP12.59□□□□□ -0.39
SDC1-206ENST00000482879 CHST9Q7L1S5 443 aa12.59□□□□□ -0.39
SDC1-206ENST00000482879 NLRP14Q86W24 1093 aa12.59□□□□□ -0.39
SDC1-206ENST00000482879 PQLC3Q8N755 202 aa12.59□□□□□ -0.39
SDC1-206ENST00000482879 NAT16Q8N8M0 369 aa12.59□□□□□ -0.39
SDC1-206ENST00000482879 RTL3Q8N8U3 475 aaKnown RBP12.59□□□□□ -0.39
SDC1-206ENST00000482879 ZNF592Q92610 1267 aa12.59□□□□□ -0.39
SDC1-206ENST00000482879 OSBPL9Q96SU4 736 aa12.59□□□□□ -0.39
SDC1-206ENST00000482879 HEMGNQ9BXL5 484 aa12.59□□□□□ -0.39
SDC1-206ENST00000482879 OSBPL8Q9BZF1 889 aa12.59□□□□□ -0.39
SDC1-206ENST00000482879 RETREG1Q9H6L5 497 aa12.59□□□□□ -0.39
SDC1-206ENST00000482879 ETNK2Q9NVF9 386 aa12.59□□□□□ -0.39
SDC1-206ENST00000482879 TMEM248Q9NWD8 314 aa12.59□□□□□ -0.39
SDC1-206ENST00000482879 DONSONQ9NYP3 566 aa12.59□□□□□ -0.39
SDC1-206ENST00000482879 ATG2BQ96BY7 2078 aa12.58□□□□□ -0.39
SDC1-206ENST00000482879 APOL1O14791 398 aa12.58□□□□□ -0.4
SDC1-206ENST00000482879 DCLK1O15075 740 aa12.58□□□□□ -0.4
SDC1-206ENST00000482879 NARSO43776 548 aaKnown RBP12.58□□□□□ -0.4
SDC1-206ENST00000482879 CST8O60676 142 aa12.58□□□□□ -0.4
SDC1-206ENST00000482879 SRFP11831 508 aa12.58□□□□□ -0.4
SDC1-206ENST00000482879 ZFXP17010 805 aaPredicted RBP12.58□□□□□ -0.4
SDC1-206ENST00000482879 TCP1P17987 556 aaKnown RBP12.58□□□□□ -0.4
SDC1-206ENST00000482879 OR1E1P30953 314 aa12.58□□□□□ -0.4
SDC1-206ENST00000482879 GJA4P35212 333 aa12.58□□□□□ -0.4
SDC1-206ENST00000482879 PTPN7P35236 360 aa12.58□□□□□ -0.4
SDC1-206ENST00000482879 DYNLT1P63172 113 aa12.58□□□□□ -0.4
SDC1-206ENST00000482879 PFKPQ01813 784 aa12.58□□□□□ -0.4
SDC1-206ENST00000482879 CDH18Q13634 790 aa12.58□□□□□ -0.4
SDC1-206ENST00000482879 TFDP2Q14188 446 aa12.58□□□□□ -0.4
SDC1-206ENST00000482879 TMCO3Q6UWJ1 677 aa12.58□□□□□ -0.4
SDC1-206ENST00000482879 MFN1Q8IWA4 741 aa12.58□□□□□ -0.4
SDC1-206ENST00000482879 FIBINQ8TAL6 211 aa12.58□□□□□ -0.4
SDC1-206ENST00000482879 DNASE1L2Q92874 299 aa12.58□□□□□ -0.4
SDC1-206ENST00000482879 XPO6Q96QU8 1125 aaKnown RBP12.58□□□□□ -0.4
SDC1-206ENST00000482879 PRDM16Q9HAZ2 1276 aa12.58□□□□□ -0.4
SDC1-206ENST00000482879 TRPV5Q9NQA5 729 aa12.58□□□□□ -0.4
SDC1-206ENST00000482879 CLEC4EQ9ULY5 219 aa12.58□□□□□ -0.4
SDC1-206ENST00000482879 EFR3BQ9Y2G0 817 aa12.58□□□□□ -0.4
SDC1-206ENST00000482879 MFHAS1Q9Y4C4 1052 aa12.58□□□□□ -0.4
SDC1-206ENST00000482879 SAR1BQ9Y6B6 198 aa12.58□□□□□ -0.4
SDC1-206ENST00000482879 ZNF500O60304 480 aaPredicted RBP12.57□□□□□ -0.4
SDC1-206ENST00000482879 CACNG3O60359 315 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 TJP3O95049 919 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 RHOCP08134 193 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 PRLRP16471 622 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 SLC6A11P48066 632 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 MAPKAPK2P49137 400 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 ADCY2Q08462 1091 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 GAB4Q2WGN9 574 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 C6orf118Q5T5N4 469 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 CCDC181Q5TID7 509 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 RNF43Q68DV7 783 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 NCBP2-AS2Q69YL0 99 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 SLC9A4Q6AI14 798 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 C1orf228Q6PIY5 440 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 SETD3Q86TU7 594 aaPredicted RBP12.57□□□□□ -0.4
SDC1-206ENST00000482879 RNF135Q8IUD6 432 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 ZNF557Q8N988 423 aaPredicted RBP12.57□□□□□ -0.4
SDC1-206ENST00000482879 WFDC5Q8TCV5 224 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 COG1Q8WTW3 980 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 HERPUD2Q9BSE4 406 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 SLC2A11Q9BYW1 496 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 SLC2A4RGQ9NR83 387 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 NDFIP2Q9NV92 336 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 DNAJC17Q9NVM6 304 aaKnown RBP12.57□□□□□ -0.4
SDC1-206ENST00000482879 KIAA1522Q9P206 1035 aaPredicted RBP12.57□□□□□ -0.4
SDC1-206ENST00000482879 ZNF212Q9UDV6 495 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 SORCS3Q9UPU3 1222 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 TBC1D30Q9Y2I9 924 aa12.57□□□□□ -0.4
SDC1-206ENST00000482879 ILVBLA1L0T0 632 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 CES2O00748 559 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 ZNF185O15231 689 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 TULP3O75386 442 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 SERPINB6P35237 376 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 SOX9P48436 509 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 OXCT1P55809 520 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 AMPD2Q01433 879 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 LMAN2Q12907 356 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 PAFAH1B3Q15102 231 aaKnown RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms